Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 1.3e-79 299.7 157 100.0
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 2.8e-77 292.0 157 97.5
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 6.5e-50 201.1 156 71.8
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 3.2e-49 198.7 156 71.8
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 4.6e-48 194.9 156 70.5
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 1.0e-47 193.7 156 69.9
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 1.0e-47 193.7 158 70.9
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 1.4e-47 193.4 147 73.5
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.4e-47 193.4 123 81.3
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 1.4e-47 193.4 123 81.3
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 3.0e-47 192.2 115 85.2
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 3.0e-47 192.2 114 83.3
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 3.0e-47 192.2 114 83.3
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.0e-47 192.2 137 76.6
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 8.8e-47 190.7 157 72.0
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 1.5e-46 189.9 129 76.7
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 1.5e-46 189.9 114 82.5
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.0e-46 189.5 137 75.9
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 4.4e-46 188.3 156 71.2
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 1.3e-45 186.8 156 70.5
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.7e-45 186.4 137 75.2
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 3.7e-45 185.3 115 80.0
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 3.7e-45 185.3 155 68.4
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 4.8e-45 184.9 155 69.0
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 8.2e-45 184.1 115 80.0
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 1.1e-44 183.7 154 66.9
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 1.1e-44 183.7 123 76.4
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.1e-44 183.7 121 77.7
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 1.4e-44 183.3 159 67.3
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 2.4e-44 182.6 155 66.5
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 3.1e-44 182.2 134 77.6
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 4.1e-44 181.8 148 73.0
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 4.1e-44 181.8 148 73.0
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 5.3e-44 181.4 156 68.6
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 5.3e-44 181.4 114 78.9
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 6.9e-44 181.0 156 64.7
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 6.9e-44 181.0 156 67.3
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 9.1e-44 180.6 156 66.7
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 9.1e-44 180.6 134 73.9
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 1.2e-43 180.3 115 77.4
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 1.5e-43 179.9 149 65.8
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 1.5e-43 179.9 130 75.4
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 2.6e-43 179.1 119 79.0
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.4e-43 178.7 114 78.1
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 4.5e-43 178.3 156 62.2
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 4.5e-43 178.3 114 78.9
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 4.5e-43 178.3 114 78.9
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 5.9e-43 177.9 134 73.9
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 7.7e-43 177.6 159 67.3
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 7.7e-43 177.6 131 74.8
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 7.7e-43 177.6 136 74.3
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 7.7e-43 177.6 130 74.6
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 1.0e-42 177.2 125 77.6
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.0e-42 177.2 156 66.0
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 1.3e-42 176.8 117 81.2
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 1.3e-42 176.8 137 70.8
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 1.3e-42 176.8 147 66.0
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 1.3e-42 176.8 115 79.1
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 1.7e-42 176.4 165 64.8
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 1.7e-42 176.4 149 69.1
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 1.7e-42 176.4 131 75.6
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 1.7e-42 176.4 120 75.0
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 2.2e-42 176.0 117 81.2
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 2.2e-42 176.0 137 70.1
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 2.2e-42 176.0 153 64.1
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 2.2e-42 176.0 115 78.3
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 2.2e-42 176.0 115 79.1
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.9e-42 175.6 125 76.8
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 2.9e-42 175.6 137 70.1
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 2.9e-42 175.6 154 66.9
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 3.8e-42 175.3 131 74.8
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 3.8e-42 175.3 116 80.2
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 5.0e-42 174.9 138 71.0
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 5.0e-42 174.9 131 74.8
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 6.5e-42 174.5 116 80.2
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 6.5e-42 174.5 116 77.6
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 1.1e-41 173.7 115 78.3
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 1.1e-41 173.7 113 80.5
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 1.1e-41 173.7 142 66.2
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 3.2e-41 172.2 132 72.7
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 3.2e-41 172.2 158 60.8
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 4.2e-41 171.8 115 76.5
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 4.2e-41 171.8 116 76.7
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 5.5e-41 171.4 133 68.4
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 7.2e-41 171.0 140 67.9
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 7.2e-41 171.0 116 80.2
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 7.2e-41 171.0 116 80.2
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 7.2e-41 171.0 131 70.2
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 9.4e-41 170.6 155 60.6
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 1.2e-40 170.2 144 66.0
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 1.2e-40 170.2 155 61.9
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.1e-40 169.5 116 79.3
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 2.1e-40 169.5 153 62.1
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 2.1e-40 169.5 138 65.9
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 3.6e-40 168.7 135 67.4
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 4.7e-40 168.3 117 72.6
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 1.8e-39 166.4 114 79.8
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 1.8e-39 166.4 113 76.1
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 5.2e-39 164.9 126 71.4
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 2.6e-38 162.5 128 69.5
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 2.6e-38 162.5 170 57.6
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 3.3e-38 162.2 117 77.8
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 5.7e-38 161.4 123 69.9
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 4.8e-37 158.3 154 58.4
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 1.1e-36 157.1 136 64.7
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 1.8e-36 156.4 149 61.1
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 3.1e-36 155.6 136 61.8
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 9.1e-36 154.1 115 69.6
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 7.7e-35 151.0 76 94.7
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 2.9e-34 149.1 133 59.4
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 5.0e-34 148.3 114 69.3
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 1.9e-33 146.4 76 92.1
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 4.2e-33 145.2 126 65.1
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 1.0e-31 140.6 77 88.3
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 2.3e-31 139.4 89 79.8
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 1.5e-30 136.7 109 67.9
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 3.5e-27 125.6 123 57.7
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 1.3e-26 123.6 94 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 1.3e-26 123.6 122 57.4
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 3.2e-25 119.0 119 57.1
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 2.1e-24 116.3 75 77.3
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 1.8e-23 113.2 122 52.5
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 9.8e-22 107.5 75 66.7
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 4.8e-21 105.1 80 67.5
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 6.5e-18 94.7 138 42.8
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 4.2e-17 92.0 78 56.4
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 1.0e-07 60.8 34 88.2
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 2.6e-06 56.2 65 44.6


User provided reference genes

Program Settings