Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 1.5e-264 915.6 446 100.0
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.2e-173 613.6 446 65.7
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 2.7e-170 602.4 446 64.1
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.2e-168 597.0 445 65.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 4.4e-168 595.1 446 64.3
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 1.7e-167 593.2 447 64.9
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.8e-167 592.4 447 65.3
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 3.7e-167 592.0 447 62.9
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.4e-166 590.1 443 65.7
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 3.1e-166 589.0 447 65.1
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.6e-165 586.6 447 64.9
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.0e-165 586.3 446 63.2
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 5.9e-165 584.7 429 65.7
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 7.7e-165 584.3 446 61.2
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 7.7e-165 584.3 446 61.2
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 6.6e-164 581.3 447 61.7
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 2.5e-163 579.3 447 62.9
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.6e-162 576.6 447 61.3
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.7e-162 575.1 446 61.0
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 8.0e-162 574.3 476 60.7
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 2.3e-161 572.8 447 62.2
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 5.2e-161 571.6 446 60.5
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 8.9e-161 570.9 446 62.8
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.0e-160 569.7 446 61.0
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 5.7e-160 568.2 446 59.6
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.3e-159 567.0 448 61.6
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.3e-159 567.0 446 62.6
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.7e-159 566.6 446 60.8
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.7e-159 566.6 439 62.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.2e-159 566.2 446 61.2
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 2.2e-159 566.2 447 59.5
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 2.2e-159 566.2 446 59.9
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.1e-158 563.9 446 60.3
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.1e-158 563.9 446 59.6
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.4e-158 563.5 449 60.4
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.4e-158 562.8 446 60.8
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 3.1e-158 562.4 446 60.1
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 4.5e-157 558.5 446 59.6
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 5.9e-157 558.1 446 61.0
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.0e-156 557.4 446 59.6
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.3e-156 557.0 447 59.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.7e-156 556.6 492 57.1
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.8e-156 555.4 443 60.7
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 8.6e-156 554.3 447 59.3
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.5e-155 552.7 446 60.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.3e-155 552.4 449 60.4
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 3.3e-155 552.4 460 58.3
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 4.3e-155 552.0 443 59.4
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 4.3e-155 552.0 447 58.6
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.3e-155 552.0 446 60.8
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.6e-154 550.1 443 59.1
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 2.1e-154 549.7 441 58.7
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 3.6e-154 548.9 441 59.0
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 3.6e-154 548.9 446 59.2
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.8e-153 546.6 448 58.7
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.5e-152 543.5 446 58.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 7.5e-152 541.2 446 59.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 9.8e-152 540.8 420 60.2
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.3e-151 540.4 447 59.7
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.3e-151 540.4 449 59.5
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.9e-151 539.3 449 58.4
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 3.2e-150 535.8 446 57.6
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 4.1e-150 535.4 447 57.7
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 6.0e-149 531.6 450 57.8
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 7.8e-149 531.2 446 57.0
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.0e-148 530.8 446 60.3
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.3e-148 530.4 447 56.8
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.3e-148 530.4 420 61.0
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 4.3e-147 525.4 444 57.9
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 5.6e-147 525.0 463 55.9
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 5.6e-147 525.0 385 65.7
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 5.6e-147 525.0 443 57.8
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.6e-146 523.5 446 55.6
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.2e-144 517.3 421 61.0
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 2.6e-144 516.2 446 57.4
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 9.8e-144 514.2 446 56.3
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 9.8e-144 514.2 446 56.3
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 2.9e-143 512.7 448 56.2
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 2.9e-143 512.7 448 56.2
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.1e-142 510.8 446 57.0
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.2e-142 509.2 367 67.6
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 7.8e-141 504.6 446 55.6
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 1.6e-138 496.9 446 54.5
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.8e-137 493.4 403 59.6
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.8e-137 491.5 446 54.5
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 6.8e-137 491.5 443 54.9
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 8.9e-137 491.1 367 64.0
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.7e-135 485.7 446 54.0
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.4e-134 483.0 446 57.2
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.1e-133 479.9 446 54.0
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 7.8e-133 478.0 441 57.6
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.3e-132 477.2 407 57.0
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 2.5e-131 473.0 448 52.7
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.2e-130 470.7 446 53.1
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.7e-130 468.8 384 60.7
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 1.5e-128 463.8 448 51.1
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 4.9e-127 458.8 383 57.2
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 6.4e-127 458.4 446 52.2
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.1e-126 457.6 365 62.2
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.5e-123 447.2 447 51.9
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.5e-123 447.2 447 51.9
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.5e-123 447.2 447 51.9
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.8e-122 443.0 447 52.6
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.6e-122 442.6 447 52.6
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 4.4e-120 435.6 389 54.8
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 9.9e-120 434.5 448 51.1
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.0e-113 412.5 464 47.0
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.2e-112 411.0 316 62.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.7e-111 407.1 449 47.4
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 4.6e-109 399.1 419 49.2
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 6.0e-109 398.7 459 46.2
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.5e-102 376.7 371 53.4
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 6.5e-95 352.1 440 43.0
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 7.9e-93 345.1 448 44.6
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.3e-92 343.6 440 43.4
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 3.0e-92 343.2 310 55.5
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 4.8e-90 335.9 443 42.9
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 6.5e-87 325.5 447 40.9
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.4e-86 324.3 231 67.1
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.2e-85 321.2 311 53.4
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.3e-82 311.2 372 47.8
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 4.8e-82 309.3 427 39.8
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 6.3e-82 308.9 449 41.6
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 5.9e-80 302.4 446 39.7
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 6.1e-77 292.4 384 44.3
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.0e-75 287.3 244 55.3
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.8e-68 264.2 186 68.8
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.4e-65 254.6 232 56.0
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.5e-62 244.6 310 45.2
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 8.3e-58 228.8 163 66.3
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.3e-55 221.5 481 30.8
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 3.8e-55 219.9 517 29.4
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 8.8e-52 208.8 146 69.9
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.2e-37 161.8 137 54.0
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 5.4e-33 146.4 485 28.5
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.0e-31 142.1 102 59.8
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 5.1e-23 113.2 89 59.6
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 2.8e-21 107.5 90 61.1
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 4.7e-21 106.7 72 63.9
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 5.1e-15 86.7 392 26.3
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-12 79.0 69 50.7
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.6e-08 65.1 87 43.7


User provided reference genes

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