Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0878 Cannabis sativa HOM05D006208 ORTHO05D007606 6.7e-154 547.4 286 100.0
Thecc.05G239100 Theobroma cacao HOM05D006208 ORTHO05D007606 3.1e-66 256.1 248 57.3
MD12G1014000 Malus domestica HOM05D006208 ORTHO05D007606 9.0e-66 254.6 239 60.7
Gohir.A13G096300 Gossypium hirsutum HOM05D006208 ORTHO05D007606 1.3e-64 250.8 214 63.1
Gorai.013G113800 Gossypium raimondii HOM05D006208 ORTHO05D007606 3.8e-64 249.2 214 62.6
Gohir.D13G101700 Gossypium hirsutum HOM05D006208 ORTHO05D007606 4.9e-64 248.8 214 62.6
QL07p016540 Quercus lobata HOM05D006208 ORTHO05D007606 1.4e-63 247.3 243 56.8
Duzib177G0527 Durio zibethinus HOM05D006208 ORTHO05D007606 2.1e-62 243.4 242 57.0
RcHm_v2.0_Chr3g0495701 Rosa chinensis HOM05D006208 ORTHO05D007606 2.7e-62 243.0 241 55.2
Lj1A1159G88 Lonicera japonica HOM05D006208 ORTHO05D007606 7.9e-62 241.5 243 56.4
Ca_03440_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 6.7e-61 238.4 236 57.2
Ca_08778_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 6.7e-61 238.4 236 57.2
Glyma.19G119400 Glycine max HOM05D006208 ORTHO05D007606 7.4e-60 235.0 238 55.5
MELO3C019160.2 Cucumis melo HOM05D006208 ORTHO05D007606 1.3e-59 234.2 236 56.4
TWI34G1475 Tripterygium wilfordii HOM05D006208 ORTHO05D007606 1.3e-59 234.2 238 56.3
CARHR008630 Cardamine hirsuta HOM05D006208 ORTHO05D007606 3.7e-59 232.6 235 55.7
FAN18G4346 Fragaria x ananassa HOM05D006208 ORTHO05D007606 3.7e-59 232.6 214 60.3
Ciclev10032470m.g Citrus clementina HOM05D006208 ORTHO05D007606 6.3e-59 231.9 241 53.9
FAN13G0695 Fragaria x ananassa HOM05D006208 ORTHO05D007606 8.2e-59 231.5 216 58.8
Eucgr.K01547 Eucalyptus grandis HOM05D006208 ORTHO05D007606 1.4e-58 230.7 238 52.9
FAN04G2426 Fragaria x ananassa HOM05D006208 ORTHO05D007606 1.4e-58 230.7 213 59.6
Manes.08G150900 Manihot esculenta HOM05D006208 ORTHO05D007606 3.1e-58 229.6 242 54.5
Lalb_Chr22g0358421 Lupinus albus HOM05D006208 ORTHO05D007606 4.1e-58 229.2 239 56.1
vmacro07634 Vaccinium macrocarpon HOM05D006208 ORTHO05D007606 1.2e-57 227.6 254 53.1
Nitab4.5_0015172g0010 Nicotiana tabacum HOM05D006208 ORTHO05D007606 2.0e-57 226.9 216 58.8
FvH4_5g39040 Fragaria vesca HOM05D006208 ORTHO05D007606 2.6e-57 226.5 214 58.4
Nitab4.5_0000381g0210 Nicotiana tabacum HOM05D006208 ORTHO05D007606 3.4e-57 226.1 216 58.8
GSVIVG01029918001 Vitis vinifera HOM05D006208 ORTHO05D007606 3.4e-57 226.1 251 53.4
BraA06t23774Z Brassica rapa HOM05D000200 ORTHO05D000262 1.0e-56 224.6 233 52.4
BcaB07g34110 Brassica carinata HOM05D006208 ORTHO05D007606 1.3e-56 224.2 238 52.9
Cfa019872 Carpinus fangiana HOM05D006208 ORTHO05D007606 1.3e-56 224.2 208 58.7
A06p05650 Brassica napus HOM05D000200 ORTHO05D000262 2.2e-56 223.4 233 51.9
COL.COLO4_08902 Corchorus olitorius HOM05D006208 ORTHO05D007606 2.2e-56 223.4 231 56.3
Sabra13G0059000 Salix brachista HOM05D006208 ORTHO05D007606 5.0e-56 222.2 234 54.7
Carub.0001s0806 Capsella rubella HOM05D006208 ORTHO05D007606 6.5e-56 221.9 240 52.9
VMungo1383G1214 Vigna mungo HOM05D006208 ORTHO05D007606 8.5e-56 221.5 234 53.4
Potri.013G067600 Populus trichocarpa HOM05D006208 ORTHO05D007606 1.4e-55 220.7 238 52.9
Sopen10g035070 Solanum pennellii HOM05D006208 ORTHO05D007606 3.2e-55 219.5 237 54.4
PGSC0003DMG400008402 Solanum tuberosum HOM05D006208 ORTHO05D007606 5.5e-55 218.8 215 57.2
BcaC05g24798 Brassica carinata HOM05D006208 ORTHO05D007606 9.3e-55 218.0 241 51.0
Dinv14560 Davidia involucrata HOM05D006208 ORTHO05D007606 6.1e-54 215.3 240 54.2
Lj1g0003173 Lotus japonicus HOM05D006208 ORTHO05D007606 7.9e-54 214.9 239 53.1
unitig_0.g581 Utricularia gibba HOM05D006208 ORTHO05D007606 7.9e-54 214.9 221 54.3
Medtr7g087140 Medicago truncatula HOM05D006208 ORTHO05D007606 1.8e-53 213.8 236 53.0
Solyc10g085660.3 Solanum lycopersicum HOM05D006208 ORTHO05D007606 2.3e-53 213.4 240 52.1
AL1G19150 Arabidopsis lyrata HOM05D006208 ORTHO05D007606 3.9e-53 212.6 229 52.4
arahy.Tifrunner.gnm1.ann1.71CHM8 Arachis hypogaea HOM05D006208 ORTHO05D007606 3.9e-53 212.6 239 51.9
SGA_v2.0_scaffold66G22407 Striga asiatica HOM05D006208 ORTHO05D007606 8.7e-53 211.5 257 50.2
CiPaw.09G165300 Carya illinoinensis HOM05D006208 ORTHO05D007606 1.1e-52 211.1 237 54.4
Migut.B00931 Erythranthe guttata HOM05D006208 ORTHO05D007606 1.1e-52 211.1 218 55.5
AT1G08710 Arabidopsis thaliana HOM05D006208 ORTHO05D007606 1.5e-52 210.7 236 50.8
Cc03_g15330 Coffea canephora HOM05D006208 ORTHO05D007606 1.3e-51 207.6 225 53.3
FvH4_3g02594 Fragaria vesca HOM05D006208 ORTHO05D007606 2.8e-51 206.5 238 50.4
EL10As12g24012 Beta vulgaris HOM05D006208 ORTHO05D007606 4.8e-51 205.7 212 53.3
CAN.G1018.11 Capsicum annuum HOM05D006208 ORTHO05D007606 4.8e-51 205.7 246 48.4
Peaxi162Scf00146g00097 Petunia axillaris HOM05D006208 ORTHO05D007606 8.2e-51 204.9 216 53.2
Hma1.2p1_1127F.1_g259670 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 1.1e-50 204.5 242 51.2
AUR62036506 Chenopodium quinoa HOM05D006208 ORTHO05D007606 1.4e-50 204.1 219 51.1
MBI19_g04334_MAGBIO Magnolia biondii HOM05D006208 ORTHO05D007606 5.3e-50 202.2 236 52.1
MSTRG.19726 Avicennia marina HOM05D006208 ORTHO05D007606 2.0e-49 200.3 239 48.1
Hund10725 Selenicereus undatus HOM05D006208 ORTHO05D007606 2.0e-49 200.3 251 49.8
Sed0009124 Sechium edule HOM05D006208 ORTHO05D007606 2.6e-49 199.9 221 54.8
Atru.chr2.1570 Acer truncatum HOM05D006208 ORTHO05D007606 3.4e-49 199.5 241 50.2
Nn8g39480 Nelumbo nucifera HOM05D006208 ORTHO05D007606 3.4e-49 199.5 245 48.6
ClCG04G006060 Citrullus lanatus HOM05D006208 ORTHO05D007606 1.0e-48 198.0 301 43.9
THA.LOC104798848 Tarenaya hassleriana HOM05D006208 ORTHO05D007606 1.3e-48 197.6 241 50.6
SalBow6G5221 Salvia bowleyana HOM05D006208 ORTHO05D007606 2.2e-48 196.8 238 47.5
Thhalv10008513m.g Eutrema salsugineum HOM05D006208 ORTHO05D007606 2.9e-48 196.4 235 50.2
Aqoxy6G01592 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 5.5e-47 192.2 244 47.5
Haze_20379 Corylus avellana HOM05D006208 ORTHO05D007606 1.2e-46 191.0 237 48.9
Aa31sc449G40 Aethionema arabicum HOM05D006208 ORTHO05D007606 2.1e-46 190.3 235 46.0
Sp1g07360 Schrenkiella parvula HOM05D006208 ORTHO05D007606 2.7e-46 189.9 235 47.7
DCAR_020701 Daucus carota HOM05D006208 ORTHO05D007606 1.0e-45 188.0 235 49.4
Psat3g085200 Pisum sativum HOM05D006208 ORTHO05D007606 5.1e-45 185.7 189 57.1
Hma1.2p1_0776F.1_g216610 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 8.8e-45 184.9 218 50.9
Phvul.001G107700 Phaseolus vulgaris HOM05D006208 ORTHO05D007606 1.1e-44 184.5 185 55.1
Peaxi162Scf00146g00107 Petunia axillaris HOM05D006208 ORTHO05D007606 5.7e-44 182.2 215 50.2
Peaxi162Scf62544g00003 Petunia axillaris HOM05D006208 ORTHO05D007606 5.7e-44 182.2 215 50.2
arahy.Tifrunner.gnm1.ann1.2NMK5X Arachis hypogaea HOM05D006208 ORTHO05D007606 2.8e-43 179.9 190 54.2
CsaV3_4G029050 Cucumis sativus L. HOM05D006208 ORTHO05D007606 2.8e-43 179.9 175 58.3
ECA232G0512 Erigeron canadensis HOM05D006208 ORTHO05D007606 4.8e-43 179.1 236 46.2
ATR0068G109 Amborella trichopoda HOM05D006208 ORTHO05D007606 1.9e-39 167.2 236 44.1
HPP92_022884 Vanilla planifolia HOM05D006208 ORTHO05D007606 7.2e-39 165.2 208 47.1
Ah.12g062010 Amaranthus hybridus HOM05D006208 ORTHO05D007606 2.1e-38 163.7 197 50.3
Cpa.g.sc73.15 Carica papaya HOM05D006208 ORTHO05D007606 1.5e-36 157.5 147 54.4
HanXRQChr09g0255371 Helianthus annuus HOM05D006208 ORTHO05D007606 6.3e-35 152.1 200 46.5
Lsat_1_v5_gn_4_159701 Lactuca sativa HOM05D006208 ORTHO05D007606 4.1e-34 149.4 208 44.2
TAR636G0902 Trochodendron aralioides HOM05D006208 ORTHO05D007606 5.3e-34 149.1 166 50.6
Os01g0814700 Oryza sativa ssp. japonica HOM05D006208 ORTHO05D007606 2.1e-30 137.1 188 45.7
Zm00001eb149890 Zea mays HOM05D006208 ORTHO05D007606 1.5e-28 131.0 188 44.1
SEGI_27241 Sequoiadendron giganteum HOM05D006208 ORTHO05D007606 7.5e-28 128.6 210 37.6
Rhsim03G0045700 Rhododendron simsii HOM05D006208 ORTHO05D007606 2.2e-27 127.1 104 63.5
Sc22g0000860 Simmondsia chinensis HOM05D006208 ORTHO05D007606 4.8e-27 125.9 109 60.6
Pp3c18_14450 Physcomitrium patens HOM05D006208 ORTHO05D007606 1.4e-26 124.4 249 32.9
CDE09G0594 Ceratophyllum demersum HOM05D002946 ORTHO05D007606 2.4e-26 123.6 146 49.3
Prupe.7G018500 Prunus persica HOM05D006208 ORTHO05D007606 4.1e-26 122.9 143 51.0
TPR.G35926 Trifolium pratense HOM05D006208 ORTHO05D007606 1.2e-25 121.3 81 71.6
Rhsim03G0045600 Rhododendron simsii HOM05D006208 ORTHO05D007606 2.9e-24 116.7 157 47.1
AUR62037069 Chenopodium quinoa HOM05D006208 ORTHO05D007606 8.5e-24 115.2 92 59.8
C05p06800 Brassica napus HOM05D006208 ORTHO05D007606 3.6e-22 109.8 143 46.2
BolC5t29439H Brassica oleracea HOM05D006208 ORTHO05D007606 3.6e-22 109.8 143 46.2
FAN08G0500 Fragaria x ananassa HOM05D006208 ORTHO05D007606 6.1e-22 109.0 88 62.5
TPR.G7831 Trifolium pratense HOM05D006208 ORTHO05D007606 3.0e-21 106.7 146 44.5
SMO351G0165 Selaginella moellendorffii HOM05D006208 ORTHO05D007606 4.0e-21 106.3 227 33.5
SHI14855 Sapria himalayana HOM05D000023 ORTHO05D000014 5.2e-21 105.9 178 42.1
FAN21G1425 Fragaria x ananassa HOM05D006208 ORTHO05D007606 2.7e-17 93.6 85 57.6
CBR_g36542 Chara braunii HOM05D006208 ORTHO05D007606 7.7e-17 92.0 224 31.2
Medtr7g087170 Medicago truncatula HOM05D006208 ORTHO05D007606 8.0e-14 82.0 82 54.9
Mapoly0047s0023 Marchantia polymorpha HOM05D006208 ORTHO05D007606 6.8e-13 79.0 241 26.6
Medtr7g087330 Medicago truncatula HOM05D006208 ORTHO05D007606 8.8e-13 78.6 103 49.5
Sc22g0000880 Simmondsia chinensis HOM05D006208 ORTHO05D007606 3.4e-12 76.6 160 37.5
VMungo1383G2538 Vigna mungo HOM05D006208 ORTHO05D007606 3.4e-12 76.6 93 52.7
C05p06810 Brassica napus HOM05D000200 ORTHO05D000262 4.4e-12 76.3 78 48.7
BolC5t29440H Brassica oleracea HOM05D000200 ORTHO05D000262 4.4e-12 76.3 78 48.7
AagrBONN_evm.TU.Sc2ySwM_117.1480 Anthoceros agrestis HOM05D006208 ORTHO05D007606 1.3e-11 74.7 210 26.2
Peaxi162Scf00146g00108 Petunia axillaris HOM05D006208 ORTHO05D007606 3.1e-10 70.1 80 53.8
TPR.G7822 Trifolium pratense HOM05D006208 ORTHO05D007606 5.4e-10 69.3 128 39.8
SHI14857 Sapria himalayana HOM05D006208 ORTHO05D007606 1.2e-09 68.2 55 61.8
TPR.G7816 Trifolium pratense HOM05D006208 ORTHO05D007606 1.6e-09 67.8 76 47.4
TPR.G15311 Trifolium pratense HOM05D006208 ORTHO05D007606 2.7e-09 67.0 83 49.4
Oeu054958.1 Olea europaea HOM05D006208 ORTHO05D007606 1.3e-08 64.7 86 41.9
SalBow5G5293 Salvia bowleyana HOM05D000001 ORTHO05D009952 2.9e-08 63.5 112 36.6
Oeu029768.1 Olea europaea HOM05D006208 ORTHO05D007606 3.8e-08 63.2 74 43.2
Aqoxy3G03662 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 2.5e-07 60.5 131 33.6
AL5G15230 Arabidopsis lyrata HOM05D001124 ORTHO05D007606 3.3e-07 60.1 141 35.5
Oeu029769.2 Olea europaea HOM05D006208 ORTHO05D007606 4.3e-07 59.7 74 41.9
Oeu032547.1 Olea europaea HOM05D006208 ORTHO05D007606 6.1e-06 55.8 69 40.6


User provided reference genes

Program Settings