Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 1.8e-168 595.9 310 100.0
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.3e-123 446.8 320 77.5
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 6.7e-123 444.5 322 76.4
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.5e-122 443.4 316 77.5
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 9.6e-122 440.7 292 81.2
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 2.1e-121 439.5 316 77.5
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.5e-119 433.3 310 75.2
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.5e-119 433.3 310 75.2
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 2.0e-119 433.0 268 84.0
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 2.6e-119 432.6 266 84.6
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 7.6e-119 431.0 266 84.6
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 2.2e-118 429.5 321 72.3
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 2.9e-118 429.1 268 82.1
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 3.2e-117 425.6 270 81.5
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 5.5e-117 424.9 281 79.0
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 7.1e-117 424.5 267 81.3
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 1.6e-116 423.3 311 72.7
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.6e-116 423.3 269 81.4
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 2.1e-116 422.9 267 81.6
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.7e-116 422.5 316 74.1
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 4.6e-116 421.8 320 75.0
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 1.3e-115 420.2 268 81.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.8e-115 419.9 274 81.4
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.3e-115 419.5 291 79.0
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 2.3e-115 419.5 269 79.6
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 2.3e-115 419.5 269 80.3
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.0e-115 419.1 267 80.5
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 3.0e-115 419.1 322 71.7
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 5.1e-115 418.3 281 77.6
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 8.7e-115 417.5 269 79.6
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 3.3e-114 415.6 270 80.7
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 3.3e-114 415.6 266 82.0
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 4.3e-114 415.2 292 75.3
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 5.6e-114 414.8 320 71.6
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 5.6e-114 414.8 265 80.4
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 5.6e-114 414.8 269 79.6
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 9.6e-114 414.1 267 80.5
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 9.6e-114 414.1 260 81.5
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.6e-113 413.3 268 79.5
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 8.2e-113 411.0 264 80.7
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.4e-112 410.2 314 72.0
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 3.1e-112 409.1 266 78.6
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 4.5e-111 405.2 295 72.2
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 4.5e-111 405.2 267 80.5
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 4.5e-111 405.2 322 72.7
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 7.6e-111 404.4 291 74.6
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 7.6e-111 404.4 268 79.5
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 2.2e-110 402.9 269 78.1
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 3.8e-110 402.1 263 80.2
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 1.9e-109 399.8 324 69.4
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 2.5e-109 399.4 277 74.7
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 3.2e-109 399.1 289 75.8
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 5.5e-109 398.3 270 75.2
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 5.5e-109 398.3 323 70.6
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 7.1e-109 397.9 265 78.5
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 1.6e-108 396.7 309 72.2
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.6e-108 396.7 267 77.5
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.7e-108 396.0 324 70.7
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.0e-107 394.0 269 75.1
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.3e-107 393.7 326 69.6
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.3e-107 393.7 330 68.5
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.3e-107 393.7 266 75.6
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.9e-107 392.1 265 78.9
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.9e-107 392.1 291 74.2
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 3.9e-107 392.1 330 68.2
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 5.1e-107 391.7 265 77.7
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 5.7e-106 388.3 241 80.9
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 7.4e-106 387.9 252 77.8
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.3e-105 387.1 288 73.6
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.6e-105 386.7 266 75.6
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 3.7e-105 385.6 235 85.5
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 1.1e-104 384.0 294 71.8
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.8e-104 383.3 291 70.1
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 4.1e-104 382.1 313 67.7
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.2e-103 380.6 308 66.9
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.2e-103 380.6 313 67.4
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 2.6e-103 379.4 271 72.7
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 2.6e-103 379.4 271 72.7
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 3.4e-103 379.0 289 68.2
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 3.8e-102 375.6 321 65.1
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.9e-101 373.2 296 66.6
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 4.2e-101 372.1 313 66.5
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 7.2e-101 371.3 320 66.2
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 9.3e-101 370.9 313 66.5
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 2.1e-100 369.8 313 65.8
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.1e-100 369.8 313 66.5
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 6.1e-100 368.2 266 71.8
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 1.0e-99 367.5 315 64.1
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 4.3e-98 362.1 270 73.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 8.2e-97 357.8 309 63.8
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.8e-96 356.7 269 71.0
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 2.4e-96 356.3 327 62.1
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 2.6e-95 352.8 272 70.2
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 2.2e-94 349.7 269 69.5
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 3.2e-93 345.9 266 69.5
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 1.8e-91 340.1 235 74.9
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 6.7e-91 338.2 264 67.4
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 9.7e-90 334.3 256 68.4
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.2e-87 327.4 214 78.0
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.2e-86 323.2 218 78.4
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 1.1e-85 320.9 256 65.2
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 1.0e-83 314.3 268 66.4
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 1.0e-83 314.3 272 64.7
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 3.8e-78 295.8 250 61.2
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 4.4e-74 282.3 248 60.1
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.1e-72 277.7 170 81.2
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.4e-72 276.6 183 78.7
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 2.4e-72 276.6 238 61.8
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 2.0e-66 256.9 155 80.6
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.1e-61 241.1 282 49.3
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 1.9e-61 240.4 178 70.8
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.6e-60 237.3 225 55.6
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 4.1e-56 222.6 282 47.9
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 5.6e-45 185.7 150 66.7
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 2.3e-43 180.3 179 58.1
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.8e-43 178.7 264 47.0
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 2.9e-25 120.2 81 72.8
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 7.8e-23 112.1 118 50.0
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 5.6e-21 105.9 84 66.7
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.2e-20 104.8 84 66.7
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 4.7e-20 102.8 84 66.7
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 8.4e-09 65.5 66 56.1
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 3.2e-08 63.5 66 56.1
CDE06G0370 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 7.9e-07 58.9 69 47.8


User provided reference genes

Program Settings