Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 9.7e-118 426.8 209 100.0
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 9.7e-118 426.8 209 100.0
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 1.4e-100 369.8 202 87.1
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 5.3e-100 367.9 203 87.2
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 1.6e-99 366.3 199 87.9
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 2.6e-99 365.5 201 86.6
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 4.5e-99 364.8 195 87.7
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 5.9e-99 364.4 204 86.8
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 7.7e-99 364.0 195 88.7
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 1.0e-98 363.6 196 87.2
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 1.0e-98 363.6 194 88.7
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 1.0e-98 363.6 199 87.4
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 1.0e-98 363.6 195 88.2
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 2.9e-98 362.1 198 85.9
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 5.0e-98 361.3 201 85.6
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 8.5e-98 360.5 192 88.0
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 1.1e-97 360.1 203 84.2
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 1.1e-97 360.1 198 85.9
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 1.5e-97 359.8 192 89.1
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 1.9e-97 359.4 193 88.1
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 2.5e-97 359.0 198 85.4
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 2.5e-97 359.0 198 85.4
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 2.5e-97 359.0 191 88.0
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 4.2e-97 358.2 204 83.8
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 7.2e-97 357.5 200 85.0
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 9.4e-97 357.1 190 88.9
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 1.6e-96 356.3 192 88.0
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 2.1e-96 355.9 194 87.1
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 2.1e-96 355.9 191 87.4
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 2.7e-96 355.5 192 87.5
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 2.7e-96 355.5 199 83.9
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 3.6e-96 355.1 192 85.9
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 3.6e-96 355.1 192 85.9
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 4.7e-96 354.8 192 88.0
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 6.1e-96 354.4 201 83.1
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 8.0e-96 354.0 201 83.6
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 8.0e-96 354.0 197 84.8
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 1.0e-95 353.6 192 87.0
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 1.0e-95 353.6 206 81.1
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.4e-95 353.2 192 86.5
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.8e-95 352.8 196 84.2
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 2.3e-95 352.4 201 83.6
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 4.0e-95 351.7 206 81.6
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 6.7e-95 350.9 204 82.4
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 8.8e-95 350.5 202 83.2
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 8.8e-95 350.5 190 86.8
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 8.8e-95 350.5 201 83.6
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 8.8e-95 350.5 207 81.2
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.2e-94 350.1 202 84.7
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 5.7e-94 347.8 206 80.6
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 5.7e-94 347.8 198 86.4
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 2.2e-93 345.9 205 81.5
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 3.7e-93 345.1 188 85.6
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 4.8e-93 344.7 204 80.9
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 1.8e-92 342.8 228 74.6
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 3.1e-92 342.0 201 81.1
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 4.1e-92 341.7 192 84.4
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 4.1e-92 341.7 232 75.9
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 5.3e-92 341.3 195 85.1
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 7.0e-92 340.9 196 83.7
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 7.7e-91 337.4 202 81.2
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 7.7e-91 337.4 202 81.2
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 7.7e-91 337.4 199 79.9
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 1.0e-90 337.0 201 81.6
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 2.5e-89 332.4 220 75.9
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 7.2e-89 330.9 199 82.9
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 2.7e-88 328.9 202 77.2
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 3.6e-88 328.6 195 80.0
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 4.7e-88 328.2 206 81.1
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 8.0e-88 327.4 199 81.9
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 1.4e-87 326.6 193 77.7
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 2.3e-87 325.9 193 82.9
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 1.5e-86 323.2 172 87.8
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 5.7e-86 321.2 217 73.7
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 1.3e-85 320.1 193 77.2
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 2.2e-85 319.3 244 67.2
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 3.1e-84 315.5 191 81.7
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 4.1e-84 315.1 192 77.6
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 1.0e-82 310.5 192 79.2
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 6.6e-82 307.8 200 75.5
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 2.5e-81 305.8 243 65.8
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 4.7e-80 301.6 193 73.6
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 4.0e-79 298.5 188 76.1
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 6.8e-79 297.7 212 67.5
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 1.5e-78 296.6 162 85.8
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 3.4e-78 295.4 209 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 7.5e-78 294.3 188 73.4
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 4.9e-77 291.6 197 75.1
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 8.3e-77 290.8 191 79.1
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 2.4e-76 289.3 254 61.4
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 1.2e-72 276.9 158 82.3
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 5.8e-70 268.1 197 69.5
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 5.0e-66 255.0 135 86.7
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 1.1e-65 253.8 174 68.4
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 3.3e-65 252.3 140 82.1
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 5.6e-65 251.5 218 64.7
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 4.7e-64 248.4 199 63.3
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 6.8e-63 244.6 180 64.4
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 1.2e-62 243.8 216 63.0
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 2.6e-62 242.7 197 62.9
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 2.6e-62 242.7 186 64.0
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 1.7e-61 240.0 137 79.6
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 3.9e-58 228.8 195 63.6
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 8.6e-58 227.6 180 61.1
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 3.6e-56 222.2 135 79.3
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 2.9e-53 212.6 116 82.8
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 4.1e-52 208.8 110 85.5
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 3.5e-51 205.7 113 81.4
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 1.3e-50 203.8 127 74.8
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 1.7e-50 203.4 137 71.5
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 5.1e-50 201.8 108 84.3
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 1.9e-49 199.9 178 55.6
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 4.0e-47 192.2 180 60.0
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 3.5e-43 179.1 171 53.2
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 2.1e-40 169.9 99 79.8
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 1.2e-38 164.1 87 90.8
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 6.4e-37 158.3 85 91.8
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 8.4e-37 157.9 99 72.7
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 1.4e-36 157.1 95 83.2
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 1.4e-36 157.1 81 93.8
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 1.4e-36 157.1 87 88.5
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 3.9e-34 149.1 83 88.0
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 1.9e-33 146.7 99 71.7
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 1.2e-30 137.5 84 73.8
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 3.8e-29 132.5 74 77.0
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.5e-25 119.8 68 80.9
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 1.6e-19 100.5 78 64.1
MCO12G133 Micromonas commoda HOM05D005047 ORTHO05D049269 5.7e-17 92.0 196 33.2
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 9.6e-17 91.3 48 85.4
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 1.2e-14 84.3 60 71.7
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 1.5e-14 84.0 54 70.4
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 6.5e-13 78.6 60 70.0
PRCOL_00003939 Prasinoderma coloniale HOM05D005047 ORTHO05D049269 1.6e-11 73.9 229 29.3
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 2.1e-11 73.6 68 55.9
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 2.1e-11 73.6 38 86.8
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 2.1e-11 73.6 61 67.2
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 6.1e-11 72.0 39 82.1
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 1.0e-10 71.2 38 84.2
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 3.0e-10 69.7 81 48.1
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 8.7e-10 68.2 33 93.9
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 1.1e-09 67.8 40 82.5
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.9e-09 67.0 39 76.9
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 8.2e-08 61.6 34 85.3
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 3.1e-07 59.7 30 90.0
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 6.9e-07 58.5 31 83.9
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 1.5e-06 57.4 135 34.1


User provided reference genes

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