Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0680 Cannabis sativa HOM05D008359 ORTHO05D010300 1.8e-34 150.2 157 100.0
Prupe.1G113500 Prunus persica HOM05D008359 ORTHO05D010300 1.5e-12 77.4 89 92.1
FAN12G0153 Fragaria x ananassa HOM05D008359 ORTHO05D010300 5.2e-10 68.9 86 88.4
MD13G1149500 Malus domestica HOM05D008359 ORTHO05D010300 8.9e-10 68.2 88 73.9
AT1G47970 Arabidopsis thaliana HOM05D008359 ORTHO05D010300 2.6e-09 66.6 86 82.6
Sp1g34910 Schrenkiella parvula HOM05D008359 ORTHO05D010300 3.4e-09 66.2 86 81.4
CiPaw.02G072800 Carya illinoinensis HOM05D008359 ORTHO05D010300 4.4e-09 65.9 90 85.6
Carub.0001s3705 Capsella rubella HOM05D008359 ORTHO05D010300 5.7e-09 65.5 86 80.2
AL1G54480 Arabidopsis lyrata HOM05D008359 ORTHO05D010300 7.5e-09 65.1 86 81.4
QL06p012880 Quercus lobata HOM05D008359 ORTHO05D010300 7.5e-09 65.1 88 84.1
Haze_01345 Corylus avellana HOM05D008359 ORTHO05D010300 9.8e-09 64.7 34 88.2
BcaB07g33802 Brassica carinata HOM05D008359 ORTHO05D010300 1.7e-08 63.9 31 96.8
CARHR037590 Cardamine hirsuta HOM05D008359 ORTHO05D010300 2.2e-08 63.5 86 77.9
A06p04780 Brassica napus HOM05D008359 ORTHO05D010300 4.9e-08 62.4 31 90.3
BraA06t23682Z Brassica rapa HOM05D008359 ORTHO05D010300 4.9e-08 62.4 31 90.3
PGSC0003DMG400001152 Solanum tuberosum HOM05D028028 ORTHO05D010300 4.9e-08 62.4 83 88.0
Atru.chr4.3060 Acer truncatum HOM05D008359 ORTHO05D010300 6.4e-08 62.0 87 79.3
Aa31LG10G5820 Aethionema arabicum HOM05D000167 ORTHO05D000465 8.3e-08 61.6 86 81.4
Nitab4.5_0000289g0010 Nicotiana tabacum HOM05D008359 ORTHO05D010300 8.3e-08 61.6 33 87.9
SGA_v2.0_scaffold246G44799 Striga asiatica HOM05D008359 ORTHO05D010300 8.3e-08 61.6 32 90.6
Duzib212G0105 Durio zibethinus HOM05D008359 ORTHO05D010300 1.1e-07 61.2 87 80.5
PGR031G3777 Punica granatum HOM05D008359 ORTHO05D010300 1.4e-07 60.8 30 93.3
Thecc.04G305300 Theobroma cacao HOM05D008359 ORTHO05D010300 1.4e-07 60.8 29 100.0
Sabra10G0114500 Salix brachista HOM05D008359 ORTHO05D010300 1.8e-07 60.5 35 82.9
BolC6t35360H Brassica oleracea HOM05D008359 ORTHO05D010300 2.4e-07 60.1 86 81.4
RcHm_v2.0_Chr4g0425941 Rosa chinensis HOM05D008359 ORTHO05D010300 2.4e-07 60.1 31 90.3
SGA_v2.0_scaffold227G43229 Striga asiatica HOM05D008359 ORTHO05D010300 2.4e-07 60.1 30 90.0
unitig_749.g13356 Utricularia gibba HOM05D008359 ORTHO05D010300 2.4e-07 60.1 31 90.3
FAN07G0737 Fragaria x ananassa HOM05D008359 ORTHO05D010300 3.2e-07 59.7 30 93.3
Lj3P834T33 Lonicera japonica HOM05D008359 ORTHO05D010300 3.2e-07 59.7 28 100.0
MD16G1149800 Malus domestica HOM05D008359 ORTHO05D010300 3.2e-07 59.7 30 90.0
Migut.N00029 Erythranthe guttata HOM05D008359 ORTHO05D010300 4.1e-07 59.3 31 87.1
Manes.03G207300 Manihot esculenta HOM05D008359 ORTHO05D010300 4.1e-07 59.3 30 93.3
BcaC08g42993 Brassica carinata HOM05D008359 ORTHO05D010300 5.4e-07 58.9 29 89.7
C06p02350 Brassica napus HOM05D008359 ORTHO05D010300 5.4e-07 58.9 29 89.7
Nn3g21784 Nelumbo nucifera HOM05D008359 ORTHO05D010300 5.4e-07 58.9 31 96.8
FAN04G0049 Fragaria x ananassa HOM05D024256 ORTHO05D010300 9.2e-07 58.2 31 87.1
Oeu044729.1 Olea europaea HOM05D008359 ORTHO05D010300 9.2e-07 58.2 30 86.7
Nitab4.5_0004298g0050 Nicotiana tabacum HOM05D008359 ORTHO05D010300 1.2e-06 57.8 29 93.1
Sp3g15360 Schrenkiella parvula HOM05D009524 ORTHO05D014763 1.2e-06 57.8 30 86.7
CSS0020578 Camellia sinensis var. sinensis HOM05D008359 ORTHO05D010300 1.6e-06 57.4 87 82.8
FvH4_4g20460 Fragaria vesca HOM05D008359 ORTHO05D010300 2.7e-06 56.6 30 86.7
MBI18_g27373_MAGBIO Magnolia biondii HOM05D008359 ORTHO05D010300 3.5e-06 56.2 28 96.4
CSS0040370 Camellia sinensis var. sinensis HOM05D008359 ORTHO05D010300 4.6e-06 55.8 32 78.1
Potri.010G148400 Populus trichocarpa HOM05D035266 ORTHO05D010300 4.6e-06 55.8 26 100.0
Gohir.D01G023571 Gossypium hirsutum HOM05D028176 ORTHO05D010300 5.9e-06 55.5 29 93.1
HanXRQChr01g0022331 Helianthus annuus HOM05D008359 ORTHO05D010300 5.9e-06 55.5 29 89.7
MBI19_g03271_MAGBIO Magnolia biondii HOM05D008359 ORTHO05D010300 5.9e-06 55.5 30 93.3
DCAR_030453 Daucus carota HOM05D008359 ORTHO05D010300 7.8e-06 55.1 31 83.9
FAN11G0909 Fragaria x ananassa HOM05D008359 ORTHO05D010300 7.8e-06 55.1 32 81.2
THA.LOC104821801 Tarenaya hassleriana HOM05D008359 ORTHO05D010300 7.8e-06 55.1 30 86.7


User provided reference genes

Program Settings