Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 3.7e-267 924.5 517 100.0
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 2.1e-169 599.7 554 70.8
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 9.6e-151 537.7 513 65.7
CANSAT25G3543 Cannabis sativa HOM05D006236 ORTHO05D003486 7.3e-50 202.6 389 42.9
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 3.9e-27 127.1 210 40.5
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 4.5e-23 113.6 193 36.3
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.1e-18 99.0 190 33.2
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 2.5e-18 97.8 206 31.1
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.4e-18 96.3 435 25.7
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 7.4e-18 96.3 131 40.5
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 7.4e-18 96.3 114 44.7
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.3e-17 95.5 224 30.8
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 4.8e-17 93.6 186 33.9
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 6.3e-17 93.2 114 42.1
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 8.2e-17 92.8 113 42.5
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.1e-16 92.4 131 37.4
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.8e-16 91.7 194 33.5
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 2.4e-16 91.3 203 31.0
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 4.1e-16 90.5 230 29.1
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 4.1e-16 90.5 144 39.6
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 4.1e-16 90.5 437 27.7
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.3e-16 90.1 119 42.0
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 6.9e-16 89.7 121 39.7
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 9.1e-16 89.4 117 39.3
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.2e-15 89.0 110 42.7
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 1.5e-15 88.6 114 40.4
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 2.0e-15 88.2 195 29.7
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 4.5e-15 87.0 114 39.5
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 7.7e-15 86.3 114 39.5
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.0e-14 85.9 129 38.8
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-14 85.9 415 28.2
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.0e-14 85.9 117 40.2
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.7e-14 85.1 166 30.1
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.7e-14 85.1 117 39.3
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 2.2e-14 84.7 517 23.6
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 2.2e-14 84.7 176 29.0
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.9e-14 84.3 131 37.4
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 2.9e-14 84.3 231 29.0
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 2.9e-14 84.3 153 32.0
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 5.0e-14 83.6 110 36.4
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 5.0e-14 83.6 234 25.6
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 5.0e-14 83.6 190 31.6
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 6.5e-14 83.2 415 23.6
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 8.5e-14 82.8 116 39.7
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 8.5e-14 82.8 179 31.8
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.1e-13 82.4 193 30.6
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.2e-13 80.5 180 28.9
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 5.5e-13 80.1 183 31.7
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 9.4e-13 79.3 122 36.9
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.2e-12 79.0 423 24.3
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.6e-12 78.6 173 32.4
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.1e-12 78.2 108 42.6
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.1e-12 78.2 117 36.8
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.7e-12 77.0 389 26.0
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 6.1e-12 76.6 131 35.1
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 6.1e-12 76.6 114 37.7
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.1e-12 76.6 135 39.3
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 7.9e-12 76.3 121 38.0
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 1.0e-11 75.9 223 25.1
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.4e-11 75.5 121 38.0
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.4e-11 75.5 121 38.0
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.4e-11 75.5 110 38.2
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.4e-11 75.5 109 35.8
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.4e-11 75.5 128 35.9
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.8e-11 75.1 122 36.9
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 1.8e-11 75.1 164 29.9
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 1.8e-11 75.1 119 36.1
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 2.3e-11 74.7 110 39.1
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.3e-11 74.7 120 36.7
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 2.3e-11 74.7 181 31.5
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 3.9e-11 73.9 398 22.1
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 3.9e-11 73.9 109 37.6
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 5.1e-11 73.6 204 32.8
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 5.1e-11 73.6 99 41.4
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.1e-11 73.6 112 34.8
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 6.7e-11 73.2 109 33.9
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.5e-10 72.0 228 26.8
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.5e-10 72.0 123 34.1
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.5e-10 72.0 121 33.1
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.5e-10 72.0 114 36.8
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.0e-10 71.6 223 28.7
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 3.3e-10 70.9 203 29.6
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.3e-10 70.9 111 34.2
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.3e-10 70.9 112 33.9
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.3e-10 70.9 122 35.2
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 4.4e-10 70.5 228 27.6
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 5.7e-10 70.1 119 32.8
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.7e-10 70.1 417 22.5
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 7.4e-10 69.7 116 33.6
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 7.4e-10 69.7 116 33.6
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 9.7e-10 69.3 103 38.8
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 9.7e-10 69.3 122 36.1
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 9.7e-10 69.3 122 36.1
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 9.7e-10 69.3 111 34.2
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 9.7e-10 69.3 130 35.4
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.3e-09 68.9 129 34.1
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 1.3e-09 68.9 373 24.1
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.3e-09 68.9 119 36.1
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.3e-09 68.9 109 33.9
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 1.3e-09 68.9 188 27.1
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.7e-09 68.6 224 28.1
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 1.7e-09 68.6 124 31.5
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.7e-09 68.6 109 33.9
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.7e-09 68.6 126 33.3
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.8e-09 67.8 122 35.2
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.8e-09 67.8 122 35.2
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.8e-09 67.8 111 33.3
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 2.8e-09 67.8 114 35.1
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 3.7e-09 67.4 95 42.1
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.7e-09 67.4 105 35.2
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.7e-09 67.4 189 31.2
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 3.7e-09 67.4 100 38.0
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 4.8e-09 67.0 101 37.6
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 4.8e-09 67.0 121 34.7
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.8e-09 67.0 130 30.8
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 6.3e-09 66.6 101 36.6
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 8.2e-09 66.2 129 33.3
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 8.2e-09 66.2 129 33.3
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 8.2e-09 66.2 114 28.1
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.1e-08 65.9 210 29.0
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.1e-08 65.9 243 27.2
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.1e-08 65.9 112 33.0
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 1.8e-08 65.1 236 27.5
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.8e-08 65.1 124 34.7
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 2.4e-08 64.7 139 30.9
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 3.1e-08 64.3 105 36.2
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.1e-08 64.3 101 36.6
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 4.1e-08 63.9 112 36.6
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 4.1e-08 63.9 113 35.4
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 4.1e-08 63.9 120 30.0
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 4.1e-08 63.9 109 34.9
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 4.1e-08 63.9 113 33.6
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 5.3e-08 63.5 129 34.1
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 7.0e-08 63.2 209 28.2
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 9.1e-08 62.8 61 45.9
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 1.2e-07 62.4 123 33.3
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.2e-07 62.4 135 33.3
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.5e-07 62.0 123 33.3
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 1.5e-07 62.0 123 33.3
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.5e-07 62.0 105 38.1
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.0e-07 61.6 197 25.9
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 4.5e-07 60.5 93 36.6
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 5.9e-07 60.1 132 28.8
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 7.7e-07 59.7 125 28.8
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 7.7e-07 59.7 94 38.3
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.0e-06 59.3 428 22.7
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 1.3e-06 58.9 170 30.0
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.3e-06 58.9 174 23.0
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.7e-06 58.5 132 28.0
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 2.2e-06 58.2 126 32.5
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 2.2e-06 58.2 51 51.0
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.8e-06 57.4 112 26.8
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 3.8e-06 57.4 143 29.4
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 5.0e-06 57.0 109 27.5
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 6.5e-06 56.6 112 33.9
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 6.5e-06 56.6 120 33.3
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 8.5e-06 56.2 171 28.7


User provided reference genes

Program Settings