Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 2883.6 1453 100.0
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1937.9 1482 68.2
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1937.2 1455 69.5
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1934.5 1459 69.6
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1895.2 1455 68.2
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1867.0 1456 67.7
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1845.1 1457 67.5
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1832.4 1458 66.3
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1829.3 1460 66.0
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1815.4 1477 65.1
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1815.0 1459 64.8
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1810.8 1462 65.2
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1810.8 1462 65.5
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1775.4 1460 65.1
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1773.8 1484 63.4
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1770.4 1468 64.2
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1760.7 1460 64.7
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1757.7 1461 63.4
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1754.2 1461 63.2
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1737.2 1478 62.9
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1721.1 1464 62.4
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1720.7 1461 62.1
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1718.7 1492 61.8
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1717.2 1460 62.0
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1715.3 1492 61.7
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1715.3 1461 62.6
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1703.0 1462 61.4
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1701.4 1460 62.3
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1699.5 1467 62.2
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1684.5 1540 58.8
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1680.2 1487 60.3
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1672.5 1462 61.4
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1672.5 1458 62.1
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1652.1 1472 61.1
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1651.7 1463 60.0
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1650.2 1462 60.0
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1637.9 1473 60.6
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1634.4 1466 62.2
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1634.0 1467 61.4
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1627.8 1510 60.7
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1618.6 1492 60.4
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1586.6 1481 57.7
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1577.0 1484 57.8
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1570.4 1465 58.3
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1569.3 1491 57.3
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1551.6 1467 57.6
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1550.8 1474 57.5
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1535.8 1474 57.2
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1535.0 1448 58.2
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1530.4 1467 58.0
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1526.5 1494 57.8
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1525.8 1469 57.4
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1519.2 1366 60.4
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1518.1 1479 56.9
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1510.0 1275 63.4
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1508.8 1492 56.8
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1499.6 1256 63.1
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1498.0 1464 56.4
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1494.2 1390 59.0
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1492.6 1531 56.0
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1488.0 1493 56.0
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1478.8 1490 56.2
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1469.5 1471 55.9
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1459.9 1462 55.9
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1455.3 1273 61.3
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1445.6 1424 56.0
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1438.3 1470 55.3
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1434.9 1465 55.4
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1434.5 1462 55.0
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1434.1 1466 54.8
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1432.5 1465 55.5
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1427.2 1479 54.7
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1426.0 1487 54.9
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1409.8 1454 54.3
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1387.9 1461 54.5
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1386.3 1461 54.4
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1379.4 1460 53.2
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1374.8 1461 53.7
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1374.0 1459 53.7
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1373.6 1464 53.8
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1358.2 1399 53.8
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1313.5 1455 51.8
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1306.6 1469 51.0
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1305.8 1477 51.2
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1302.7 1468 50.1
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1300.4 1317 55.7
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1271.5 1110 61.5
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1239.2 1086 62.5
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1217.2 1111 59.9
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1213.4 1176 56.6
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1167.5 1153 56.3
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1166.8 1310 52.1
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1149.4 920 65.5
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1133.2 1361 49.2
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 3.2e-308 1062.4 1052 56.0
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 1.1e-300 1037.3 1343 46.4
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 2.5e-257 893.3 1525 40.4
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 7.6e-254 881.7 1012 50.3
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.5e-252 876.7 1543 39.0
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 7.9e-251 871.7 950 52.8
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.1e-250 869.0 1488 39.7
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 5.9e-230 802.4 1552 35.6
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 2.0e-209 734.2 838 51.4
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 1.3e-205 721.5 516 70.0
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 2.4e-167 594.3 651 52.5
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 1.6e-166 591.7 420 70.0
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 8.7e-165 585.9 857 43.5
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 1.1e-162 578.9 1834 30.3
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 1.4e-151 542.0 585 53.8
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 3.4e-137 494.2 445 59.8
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 4.5e-129 467.2 591 46.4
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.9e-128 464.5 436 58.3
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 2.0e-113 415.2 1367 29.1
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 2.0e-84 318.9 596 39.9
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 4.4e-84 317.8 217 71.4
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 5.7e-84 317.4 399 48.1
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 1.1e-82 313.2 349 51.3
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 2.6e-76 292.0 262 60.3
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 3.9e-64 251.5 260 53.8
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.9e-59 235.3 1161 24.9
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 3.1e-45 188.7 161 64.6
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.0e-24 120.6 82 70.7
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 1.0e-24 120.6 82 74.4
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 4.3e-23 115.2 79 69.6
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 1.1e-21 110.5 71 74.6
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.2e-19 102.8 67 68.7
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.2e-19 102.8 68 67.6
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 3.6e-17 95.5 59 74.6
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.1e-15 90.5 82 54.9
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.0e-12 79.7 103 45.6
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 4.5e-12 78.6 105 46.7
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 3.8e-11 75.5 86 51.2
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 2.1e-09 69.7 44 77.3
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 4.7e-09 68.6 71 49.3
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 3.3e-07 62.4 43 69.8


User provided reference genes

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