Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 3.5e-189 664.8 343 100.0
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 1.9e-155 552.7 346 85.5
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.0e-23 115.2 235 34.9
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 6.2e-21 105.9 258 33.7
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 1.3e-18 98.2 294 30.6
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 3.2e-17 93.6 235 34.9
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 4.2e-17 93.2 291 28.5
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 7.1e-17 92.4 191 34.6
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 1.2e-16 91.7 328 30.8
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 2.7e-16 90.5 187 33.7
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 6.0e-16 89.4 153 41.2
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.0e-15 88.6 204 33.3
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 1.3e-15 88.2 171 37.4
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.3e-15 88.2 345 31.0
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 2.3e-15 87.4 138 43.5
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.3e-15 87.4 181 34.8
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 3.9e-15 86.7 155 40.0
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 6.6e-15 85.9 157 38.9
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 1.1e-14 85.1 188 34.0
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 1.5e-14 84.7 153 43.1
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 3.3e-14 83.6 178 35.4
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 5.6e-14 82.8 189 31.7
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 5.6e-14 82.8 165 33.9
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 7.3e-14 82.4 145 40.0
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 7.3e-14 82.4 145 40.0
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 7.3e-14 82.4 168 38.1
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 9.6e-14 82.0 344 29.4
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 2.1e-13 80.9 151 41.1
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 3.6e-13 80.1 170 33.5
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.8e-13 79.7 228 30.3
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 6.2e-13 79.3 152 35.5
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 6.2e-13 79.3 99 44.4
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 1.1e-12 78.6 70 50.0
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 1.8e-12 77.8 411 26.0
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.4e-12 77.4 149 35.6
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 5.3e-12 76.3 146 38.4
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.2e-11 75.1 288 28.5
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-11 75.1 192 31.2
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 1.2e-11 75.1 122 37.7
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.2e-11 75.1 291 27.5
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 2.6e-11 73.9 77 50.6
Lalb_Chr02g0144301 Lupinus albus HOM05D004311 ORTHO05D005145 2.6e-11 73.9 157 36.3
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 4.5e-11 73.2 352 29.3
MSTRG.21993 Avicennia marina HOM05D004311 ORTHO05D005145 5.8e-11 72.8 215 29.8
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 7.6e-11 72.4 160 33.1
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 4.9e-10 69.7 162 30.9
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 6.4e-10 69.3 141 35.5
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.1e-09 68.6 254 30.3
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 1.9e-09 67.8 123 34.1
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 2.4e-09 67.4 271 28.0
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 2.4e-09 67.4 269 28.6
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 2.4e-09 67.4 148 35.8
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 5.4e-09 66.2 169 31.4
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 5.4e-09 66.2 84 45.2
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 7.1e-09 65.9 271 25.5
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 9.3e-09 65.5 142 31.0
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 9.3e-09 65.5 142 31.0
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 9.3e-09 65.5 142 31.0
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 9.3e-09 65.5 148 35.8
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.6e-08 64.7 125 36.0
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 1.6e-08 64.7 129 34.9
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 2.1e-08 64.3 69 46.4
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 4.6e-08 63.2 360 27.5
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 7.9e-08 62.4 129 34.1
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 7.9e-08 62.4 251 26.3
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 7.9e-08 62.4 99 37.4
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.0e-07 62.0 86 43.0
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 1.8e-07 61.2 52 51.9
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 2.3e-07 60.8 90 35.6
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 3.0e-07 60.5 128 36.7
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.9e-07 60.1 256 25.8
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 3.9e-07 60.1 82 42.7
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 3.9e-07 60.1 52 48.1
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 3.9e-07 60.1 68 38.2
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 5.1e-07 59.7 80 36.2
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 5.1e-07 59.7 96 38.5
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 5.1e-07 59.7 321 24.3
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 6.7e-07 59.3 320 27.2
PSO339G0153 Papaver somniferum HOM05D015611 ORTHO05D026019 8.7e-07 58.9 52 50.0
PSO384G3421 Papaver somniferum HOM05D015611 ORTHO05D026019 8.7e-07 58.9 133 30.8
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 8.7e-07 58.9 117 38.5
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-06 58.5 248 26.6
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.5e-06 58.2 57 49.1
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 1.9e-06 57.8 122 31.1
Ah.13g074370 Amaranthus hybridus HOM05D004311 ORTHO05D005145 2.5e-06 57.4 125 34.4
CARHR137580 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.5e-06 57.4 226 26.5
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 3.3e-06 57.0 56 46.4
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 5.6e-06 56.2 100 39.0
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 7.4e-06 55.8 131 33.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 7.4e-06 55.8 55 47.3
Lsat_1_v5_gn_8_86701 Lactuca sativa HOM05D034205 ORTHO05D035130 7.4e-06 55.8 55 49.1
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 7.4e-06 55.8 90 37.8
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 7.4e-06 55.8 55 49.1
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 9.6e-06 55.5 250 26.4
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 9.6e-06 55.5 115 33.0


User provided reference genes

Program Settings