Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 7.4e-31 137.1 101 100.0
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.7e-14 82.8 82 69.5
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 4.8e-14 81.3 82 69.5
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.4e-13 79.7 101 48.5
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.4e-13 79.0 82 51.2
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.4e-13 79.0 82 54.9
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 2.4e-13 79.0 82 54.9
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.4e-13 79.0 82 54.9
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.1e-13 78.2 82 51.2
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.1e-13 78.2 82 51.2
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.1e-13 78.2 82 51.2
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 4.1e-13 78.2 82 51.2
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 4.1e-13 78.2 82 51.2
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 4.1e-13 78.2 82 51.2
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 4.1e-13 78.2 82 51.2
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 4.1e-13 78.2 82 51.2
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 5.3e-13 77.8 82 51.2
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 5.3e-13 77.8 82 51.2
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.3e-13 77.8 82 54.9
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 5.3e-13 77.8 82 56.1
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 5.3e-13 77.8 82 56.1
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 5.3e-13 77.8 82 56.1
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 7.0e-13 77.4 82 51.2
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 7.0e-13 77.4 82 51.2
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 7.0e-13 77.4 82 51.2
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 9.1e-13 77.0 82 54.9
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-12 76.6 82 50.0
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-12 76.6 82 50.0
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.2e-12 76.6 82 50.0
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.2e-12 76.6 82 51.2
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 1.6e-12 76.3 82 50.0
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.6e-12 76.3 82 51.2
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.0e-12 75.9 82 50.0
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 2.0e-12 75.9 82 50.0
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 2.0e-12 75.9 82 50.0
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 2.0e-12 75.9 82 50.0
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 2.0e-12 75.9 82 54.9
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.0e-12 75.9 82 50.0
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 2.6e-12 75.5 82 50.0
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 2.6e-12 75.5 82 48.8
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 2.6e-12 75.5 82 50.0
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 2.6e-12 75.5 82 50.0
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 2.6e-12 75.5 82 48.8
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 2.6e-12 75.5 82 48.8
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 2.6e-12 75.5 82 50.0
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 2.6e-12 75.5 82 52.4
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.5e-12 75.1 82 50.0
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 4.5e-12 74.7 82 53.7
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 4.5e-12 74.7 82 51.2
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 4.5e-12 74.7 80 55.0
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 4.5e-12 74.7 82 48.8
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 4.5e-12 74.7 82 53.7
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 4.5e-12 74.7 99 46.5
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 5.9e-12 74.3 82 50.0
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 5.9e-12 74.3 82 50.0
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.9e-12 74.3 82 51.2
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 5.9e-12 74.3 82 53.7
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-11 73.6 82 48.8
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.0e-11 73.6 97 47.4
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.0e-11 73.6 82 51.2
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.3e-11 73.2 82 48.8
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 1.3e-11 73.2 82 51.2
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.7e-11 72.8 82 51.2
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-11 72.8 81 54.3
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 2.2e-11 72.4 82 51.2
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 2.9e-11 72.0 82 47.6
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 2.9e-11 72.0 87 50.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 2.9e-11 72.0 82 50.0
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 2.9e-11 72.0 82 51.2
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 3.8e-11 71.6 82 57.3
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 3.8e-11 71.6 82 52.4
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 3.8e-11 71.6 85 50.6
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 3.8e-11 71.6 82 50.0
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 3.8e-11 71.6 78 50.0
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 5.0e-11 71.2 82 76.8
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 5.0e-11 71.2 80 52.5
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 5.0e-11 71.2 82 48.8
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 6.5e-11 70.9 82 47.6
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 8.5e-11 70.5 82 47.6
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 8.5e-11 70.5 82 74.4
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 8.5e-11 70.5 82 50.0
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 8.5e-11 70.5 80 51.2
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 8.5e-11 70.5 82 48.8
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 8.5e-11 70.5 81 48.1
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 8.5e-11 70.5 82 48.8
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 1.1e-10 70.1 82 46.3
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.1e-10 70.1 82 46.3
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.5e-10 69.7 79 51.9
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.5e-10 69.7 82 46.3
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.5e-10 69.7 82 46.3
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.9e-10 69.3 80 50.0
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.9e-10 69.3 81 53.1
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.9e-10 69.3 80 48.8
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.9e-10 69.3 82 50.0
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.5e-10 68.9 82 47.6
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 2.5e-10 68.9 80 50.0
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 2.5e-10 68.9 82 47.6
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 2.5e-10 68.9 80 47.5
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 3.2e-10 68.6 79 49.4
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 3.2e-10 68.6 80 50.0
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 4.2e-10 68.2 81 49.4
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 5.5e-10 67.8 81 48.1
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 5.5e-10 67.8 82 48.8
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 5.5e-10 67.8 80 43.8
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 5.5e-10 67.8 80 47.5
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 5.5e-10 67.8 82 48.8
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 5.5e-10 67.8 82 48.8
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.2e-09 66.6 79 48.1
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 1.2e-09 66.6 82 47.6
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.2e-09 66.6 82 47.6
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.2e-09 66.6 82 47.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.2e-09 66.6 82 47.6
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.2e-09 66.6 83 49.4
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.1e-09 65.9 80 50.0
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.1e-09 65.9 80 45.0
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.7e-09 65.5 82 46.3
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 3.6e-09 65.1 80 48.8
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 4.7e-09 64.7 82 47.6
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 6.1e-09 64.3 83 47.0
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 8.0e-09 63.9 84 45.2
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.4e-08 63.2 81 46.9
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 4.0e-08 61.6 80 47.5
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 6.7e-08 60.8 80 42.5
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.1e-07 60.1 82 43.9
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.1e-07 60.1 78 46.2
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.1e-07 60.1 80 42.5
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.5e-07 59.7 79 44.3
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 4.4e-07 58.2 81 43.2
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 9.7e-07 57.0 82 39.0
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.3e-06 56.6 80 41.2
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 3.7e-06 55.1 80 37.5


User provided reference genes

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