Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.1e-39 166.4 100 100.0
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 7.3e-23 110.5 85 69.4
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 2.8e-22 108.6 85 65.9
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 2.8e-22 108.6 85 65.9
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 6.2e-22 107.5 79 68.4
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.8e-21 105.9 83 68.7
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 4.0e-21 104.8 85 63.5
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.0e-21 104.8 83 67.5
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 1.5e-20 102.8 81 67.9
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.5e-20 102.8 88 64.8
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 2.0e-20 102.4 99 67.7
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 2.6e-20 102.1 97 61.9
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 2.6e-20 102.1 78 69.2
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 2.6e-20 102.1 88 68.2
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 4.5e-20 101.3 82 64.6
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 4.5e-20 101.3 93 58.1
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 2.2e-19 99.0 100 56.0
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 4.9e-19 97.8 83 62.7
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 1.1e-18 96.7 78 64.1
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 2.4e-18 95.5 98 57.1
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 2.4e-18 95.5 83 65.1
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 2.4e-18 95.5 86 66.3
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.2e-18 95.1 78 76.9
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 4.2e-18 94.7 114 54.4
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 5.4e-18 94.4 89 59.6
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 5.4e-18 94.4 106 54.7
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 5.4e-18 94.4 113 54.0
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 7.1e-18 94.0 84 72.6
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 7.9e-17 90.5 103 54.4
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 1.3e-16 89.7 85 57.6
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.8e-16 89.4 84 58.3
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 3.0e-16 88.6 105 52.4
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 3.0e-16 88.6 105 52.4
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.9e-16 88.2 86 68.6
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 8.7e-16 87.0 126 48.4
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 1.9e-15 85.9 101 52.5
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.9e-15 85.9 98 51.0
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.9e-15 85.9 109 47.7
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.5e-15 85.5 78 71.8
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.3e-15 84.7 85 69.4
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.6e-15 84.3 75 60.0
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 1.6e-14 82.8 76 61.8
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 2.1e-14 82.4 126 45.2
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 4.8e-14 81.3 88 64.8
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 4.8e-14 81.3 98 62.2
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.1e-13 80.1 118 43.2
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.1e-13 80.1 100 61.0
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 1.1e-13 80.1 86 66.3
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.4e-13 79.7 133 39.8
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.4e-13 79.7 99 51.5
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 1.4e-13 79.7 106 48.1
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 3.1e-13 78.6 85 57.6
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 3.4e-12 75.1 147 38.1
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 5.8e-12 74.3 81 50.6
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 7.6e-12 73.9 41 90.2
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 1.3e-11 73.2 78 66.7
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.3e-11 73.2 84 52.4
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.3e-11 73.2 84 52.4
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 1.7e-11 72.8 41 85.4
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 1.7e-11 72.8 45 80.0
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.7e-11 72.8 98 59.2
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 1.7e-11 72.8 41 85.4
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.7e-11 72.8 41 85.4
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 2.2e-11 72.4 85 49.4
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 2.2e-11 72.4 41 85.4
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 3.8e-11 71.6 95 47.4
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 3.8e-11 71.6 102 44.1
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 3.8e-11 71.6 41 85.4
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 4.9e-11 71.2 78 64.1
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 4.9e-11 71.2 41 82.9
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.5e-11 70.9 85 50.6
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 6.5e-11 70.9 100 56.0
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 6.5e-11 70.9 85 58.8
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 6.5e-11 70.9 163 35.6
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 1.1e-10 70.1 41 80.5
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 1.1e-10 70.1 41 80.5
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.4e-10 69.7 100 44.0
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.4e-10 69.7 82 63.4
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 1.9e-10 69.3 65 60.0
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 2.5e-10 68.9 85 49.4
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 2.5e-10 68.9 41 80.5
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 3.2e-10 68.6 101 47.5
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 3.2e-10 68.6 79 53.2
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 3.2e-10 68.6 83 50.6
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 3.2e-10 68.6 100 57.0
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 3.2e-10 68.6 41 78.0
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 4.2e-10 68.2 87 49.4
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 4.2e-10 68.2 99 46.5
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 4.2e-10 68.2 78 53.8
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 4.2e-10 68.2 41 80.5
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 4.2e-10 68.2 88 60.2
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 5.5e-10 67.8 79 53.2
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 5.5e-10 67.8 105 41.0
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 5.5e-10 67.8 80 47.5
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 7.1e-10 67.4 108 39.8
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 9.3e-10 67.0 86 48.8
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 9.3e-10 67.0 86 50.0
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 9.3e-10 67.0 44 81.8
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 9.3e-10 67.0 98 48.0
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 1.2e-09 66.6 127 40.9
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.6e-09 66.2 89 57.3
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 1.6e-09 66.2 99 57.6
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.6e-09 66.2 67 58.2
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 1.6e-09 66.2 84 50.0
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 2.1e-09 65.9 85 48.2
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.1e-09 65.9 95 47.4
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.7e-09 65.5 41 75.6
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.7e-09 65.5 41 75.6
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.7e-09 65.5 41 75.6
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 2.7e-09 65.5 100 47.0
Zm00001eb098770 Zea mays HOM05D003821 ORTHO05D004449 2.7e-09 65.5 62 71.0
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.6e-09 64.7 40 77.5
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 4.6e-09 64.7 88 58.0
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 6.0e-09 64.3 71 54.9
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 1.0e-08 63.5 86 48.8
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 1.0e-08 63.5 40 77.5
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 1.0e-08 63.5 83 57.8
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 1.0e-08 63.5 128 40.6
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 1.3e-08 63.2 88 58.0
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.3e-08 63.2 46 69.6
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 1.3e-08 63.2 79 50.6
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 1.3e-08 63.2 48 68.8
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 1.3e-08 63.2 34 91.2
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.3e-08 62.4 88 58.0
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.3e-08 62.4 88 58.0
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.3e-08 62.4 41 75.6
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.3e-08 62.4 88 58.0
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 2.3e-08 62.4 100 55.0
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 2.3e-08 62.4 53 62.3
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 3.0e-08 62.0 86 44.2
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.0e-08 62.0 85 48.2
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 3.0e-08 62.0 85 49.4
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.9e-08 61.6 73 50.7
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 3.9e-08 61.6 82 59.8
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 5.1e-08 61.2 97 46.4
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.1e-08 61.2 78 60.3
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 5.1e-08 61.2 85 58.8
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.1e-08 61.2 86 57.0
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 8.7e-08 60.5 40 80.0
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 8.7e-08 60.5 40 80.0
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 8.7e-08 60.5 88 56.8
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.1e-07 60.1 40 80.0
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 1.1e-07 60.1 74 50.0
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 1.1e-07 60.1 41 70.7
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.5e-07 59.7 41 75.6
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.9e-07 59.3 77 59.7
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 1.9e-07 59.3 97 44.3
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.3e-07 58.5 75 58.7
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.3e-07 58.2 41 73.2
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.7e-07 57.8 52 57.7
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 5.7e-07 57.8 85 47.1
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 5.7e-07 57.8 78 46.2
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 7.4e-07 57.4 124 33.9
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 9.6e-07 57.0 91 40.7
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 1.6e-06 56.2 90 44.4
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 2.8e-06 55.5 114 36.0
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 3.7e-06 55.1 97 42.3
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.7e-06 55.1 119 37.8
Cre07.g329800 Chlamydomonas reinhardtii HOM05D003821 ORTHO05D004449 6.2e-06 54.3 61 47.5


User provided reference genes

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