Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1778.1 874 100.0
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1416.0 880 80.2
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1409.0 880 79.1
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1406.3 880 79.2
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1397.1 878 78.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1378.2 892 77.1
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1362.1 864 78.0
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1359.7 864 77.9
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1356.3 882 77.1
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1355.1 864 77.8
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1350.1 888 76.6
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1331.6 878 75.4
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1321.2 879 75.4
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1315.8 883 73.8
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1313.5 889 74.7
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1311.2 880 75.1
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1307.0 919 71.7
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1306.6 877 75.8
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1302.7 881 74.9
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1289.2 855 75.3
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1288.9 878 72.9
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1286.6 882 74.0
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1284.6 880 74.5
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1283.5 883 72.6
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1278.8 878 72.6
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1253.8 880 73.5
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1251.1 856 73.1
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1246.9 951 67.8
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1243.0 903 69.7
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1241.9 930 68.6
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1234.2 887 71.5
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1233.8 881 71.2
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1233.8 881 71.2
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1223.0 861 71.5
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1216.8 878 70.0
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1216.1 856 71.8
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1214.9 856 71.0
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1204.5 864 70.4
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1199.5 862 70.5
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1196.8 876 69.7
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1194.5 898 68.7
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1193.3 891 68.7
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1192.2 877 69.3
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1191.8 856 70.6
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1190.6 867 70.5
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1174.8 860 69.7
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1174.5 855 70.2
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1174.5 796 74.5
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1173.3 862 69.1
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1172.1 855 70.1
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1171.8 1007 61.9
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1167.5 873 68.8
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1166.0 855 69.9
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1165.2 844 69.9
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1156.0 879 67.8
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1156.0 870 68.2
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1145.2 833 70.8
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1144.4 879 66.9
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1143.3 857 68.4
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1136.3 866 67.9
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1132.9 812 70.1
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 0.0e+00 1124.4 951 62.4
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1111.7 857 66.3
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 0.0e+00 1108.6 859 66.2
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1105.5 892 64.7
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1098.6 885 65.4
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1094.0 884 65.4
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1084.7 850 65.5
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 0.0e+00 1083.6 883 63.5
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1082.8 871 64.8
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1075.8 857 65.3
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 3.2e-308 1061.6 869 64.2
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 9.8e-305 1050.0 878 63.7
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 1.4e-303 1046.2 834 65.6
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 3.5e-302 1041.6 855 64.2
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 4.0e-290 1001.5 868 61.3
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 5.7e-289 997.7 856 60.9
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 5.7e-289 997.7 856 61.3
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 2.4e-287 992.3 852 60.8
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 3.2e-287 991.9 872 60.0
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 3.1e-282 975.3 856 60.4
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 4.0e-282 974.9 897 58.6
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 3.4e-281 971.8 863 60.0
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 5.8e-281 971.1 853 60.4
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 5.8e-281 971.1 853 60.4
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.2e-278 963.4 852 59.5
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 2.0e-278 962.6 852 59.4
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 7.8e-278 960.7 789 63.0
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 4.4e-273 944.9 853 59.8
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 2.9e-272 942.2 853 58.9
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 4.1e-271 938.3 848 59.1
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 8.1e-267 924.1 845 58.0
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.1e-251 872.8 854 56.7
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 1.1e-236 823.9 788 57.1
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 9.3e-231 804.3 721 59.9
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.5e-228 797.0 796 57.3
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 8.7e-221 771.2 890 51.9
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.2e-209 734.2 527 71.0
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.4e-202 709.9 919 47.0
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 9.7e-196 688.0 903 46.1
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 2.6e-188 663.3 621 57.5
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.6e-185 654.1 400 79.5
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 6.3e-179 632.1 370 82.2
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 6.6e-168 595.5 415 72.0
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 7.3e-167 592.0 850 42.7
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 4.7e-158 562.8 431 66.6
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.1e-157 561.6 474 64.1
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.1e-151 541.6 389 72.2
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 5.4e-130 469.5 516 51.7
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.3e-119 433.3 276 75.0
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 2.0e-95 354.8 362 54.1
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.2e-92 345.5 545 40.4
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.2e-92 345.5 545 40.4
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 7.0e-85 319.7 285 57.5
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 8.5e-83 312.8 175 85.1
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.6e-81 308.5 282 61.3
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.6e-81 308.5 375 48.8
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 7.2e-74 283.1 151 88.7
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 1.2e-71 275.8 860 29.7
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.5e-63 248.8 145 84.1
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 3.7e-62 244.2 137 84.7
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.0e-56 224.2 137 78.1
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.7e-51 208.8 117 78.6
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 7.5e-47 193.4 224 44.2
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 5.2e-40 170.6 242 36.4
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 9.2e-37 159.8 188 51.6
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 2.1e-28 132.1 86 76.7
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 2.1e-28 132.1 270 31.9
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 1.8e-24 119.0 129 48.1
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 3.4e-23 114.8 163 40.5
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 2.6e-15 88.6 129 39.5
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 7.6e-15 87.0 55 69.1
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 7.6e-15 87.0 231 26.0
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.9e-14 85.1 64 67.2
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 81 56.8
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.4e-13 82.8 61 68.9
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.2e-13 81.3 55 72.7
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.4e-13 80.9 55 72.7
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 7.9e-12 77.0 118 39.0
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.5e-10 72.8 33 93.9
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 1.5e-07 62.8 51 58.8


User provided reference genes

Program Settings