Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 1.3e-265 919.5 570 100.0
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 2.4e-195 686.0 579 72.5
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 7.8e-194 681.0 573 72.8
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 6.4e-188 661.4 541 76.2
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 4.1e-187 658.7 578 68.3
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 1.6e-186 656.8 593 67.5
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.0e-186 656.4 553 72.2
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.7e-185 653.3 560 70.2
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.6e-183 646.7 547 74.2
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 8.1e-183 644.4 543 73.8
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.2e-181 640.6 583 69.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.6e-181 639.4 562 68.3
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 4.4e-181 638.6 550 72.2
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 4.4e-181 638.6 555 71.0
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.2e-178 630.6 547 69.5
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 3.3e-176 622.5 540 69.8
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.2e-175 620.5 574 67.4
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 3.4e-173 612.5 552 69.6
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.3e-172 610.5 544 70.2
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.7e-172 610.1 551 66.2
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 4.9e-172 608.6 544 70.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 7.1e-171 604.7 542 72.9
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 2.7e-170 602.8 544 68.4
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 3.5e-170 602.4 499 72.1
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.0e-169 600.9 521 70.4
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.0e-169 600.9 552 64.9
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 2.1e-167 593.2 546 66.3
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 3.6e-167 592.4 549 66.8
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 4.7e-167 592.0 542 66.6
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 6.2e-167 591.7 539 67.9
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 1.1e-166 590.9 494 73.7
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.8e-166 590.1 484 74.6
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 3.1e-166 589.3 583 64.8
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.2e-165 587.4 544 66.5
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 9.9e-165 584.3 587 65.6
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 2.2e-164 583.2 545 68.1
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 8.4e-164 581.3 542 67.2
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 1.9e-163 580.1 541 66.5
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 2.4e-163 579.7 554 63.5
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 5.4e-163 578.6 550 66.2
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.5e-160 570.5 548 67.3
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 2.5e-160 569.7 544 67.1
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 3.3e-160 569.3 547 64.9
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 3.3e-160 569.3 550 65.6
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.1e-159 566.6 576 63.2
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 6.2e-159 565.1 490 72.2
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 4.0e-158 562.4 678 56.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 4.0e-158 562.4 546 65.4
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 4.2e-155 552.4 568 64.4
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.4e-155 552.0 564 64.7
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.0e-153 547.7 578 62.6
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 7.4e-152 541.6 519 67.8
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 9.6e-152 541.2 502 71.5
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.8e-150 537.0 551 63.3
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 1.2e-149 534.3 496 64.9
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 7.6e-149 531.6 545 62.8
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 4.9e-148 528.9 576 58.7
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.5e-147 525.4 481 69.2
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.2e-146 524.2 519 63.0
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 4.6e-146 522.3 540 65.0
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 3.9e-145 519.2 538 61.9
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.9e-144 516.9 553 58.0
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.6e-143 513.8 471 69.2
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 3.7e-143 512.7 536 64.4
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 1.8e-142 510.4 624 53.4
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 5.3e-142 508.8 559 57.8
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 9.0e-142 508.1 483 67.3
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 5.8e-141 505.4 576 58.7
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.3e-140 504.2 538 55.9
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 5.1e-137 492.3 539 56.0
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.1e-136 491.1 517 58.0
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 1.9e-136 490.3 444 69.1
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 2.8e-135 486.5 567 58.4
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 6.3e-135 485.3 581 57.8
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 4.1e-134 482.6 571 51.8
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 9.0e-134 481.5 534 54.9
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 2.6e-133 479.9 546 57.5
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 5.9e-133 478.8 538 55.8
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.3e-132 477.6 548 59.7
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 8.5e-132 474.9 366 76.8
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.1e-131 474.6 540 58.3
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 4.6e-130 469.2 535 53.8
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.3e-129 466.8 538 53.7
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.5e-128 464.2 472 61.7
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.9e-128 463.8 562 51.2
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 5.3e-126 455.7 537 62.9
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 9.1e-126 454.9 536 62.5
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.2e-125 454.5 539 57.7
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 2.0e-125 453.8 479 66.6
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.0e-124 451.4 535 60.6
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 5.0e-124 449.1 431 65.7
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 8.5e-124 448.4 535 60.4
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 8.5e-124 448.4 535 60.4
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 2.3e-121 440.3 446 66.6
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 5.1e-121 439.1 538 55.8
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 2.2e-119 433.7 525 59.0
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 4.8e-119 432.6 530 56.0
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.8e-118 430.6 542 54.4
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 2.2e-116 423.7 300 75.7
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.9e-115 420.6 299 73.2
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 3.0e-113 413.3 489 52.8
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 2.4e-94 350.5 355 70.1
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 2.1e-90 337.4 487 53.4
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 9.8e-88 328.6 194 86.1
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.3e-84 318.2 231 69.7
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 2.9e-84 317.0 227 75.8
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 1.2e-82 311.6 194 79.4
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.5e-67 261.5 224 62.1
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 3.3e-67 260.4 223 61.9
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 1.2e-66 258.5 224 62.1
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.8e-65 254.6 222 60.8
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 3.5e-61 240.4 255 53.7
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 1.7e-60 238.0 297 47.8
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 9.9e-56 222.2 167 70.1
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 2.9e-55 220.7 217 57.1
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.1e-51 208.8 578 35.5
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 9.0e-49 199.1 224 54.0
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 2.1e-45 188.0 204 66.7
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 5.1e-44 183.3 198 49.0
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.5e-43 181.0 234 45.7
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 5.3e-41 173.3 269 40.9
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 6.9e-41 172.9 236 43.6
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 5.6e-35 153.3 155 60.6
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 6.9e-33 146.4 106 73.6
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.3e-31 142.1 148 51.4
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 5.5e-30 136.7 194 45.9
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 3.7e-26 124.0 198 45.5
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 8.2e-26 122.9 158 51.9
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 1.1e-25 122.5 104 67.3
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 1.1e-22 112.5 69 81.2
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 4.2e-22 110.5 66 77.3
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 3.0e-20 104.4 133 49.6
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 2.5e-19 101.3 152 42.8
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 3.3e-19 100.9 101 58.4
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.3e-18 99.0 91 56.0
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.6e-18 98.6 111 52.3
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 3.4e-16 90.9 178 42.1
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 5.9e-16 90.1 104 55.8
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 7.6e-16 89.7 92 56.5
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 1.3e-15 89.0 109 73.4
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 3.2e-14 84.3 70 62.9
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 9.3e-14 82.8 116 45.7
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 1.2e-13 82.4 86 54.7
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.8e-12 78.6 68 51.5
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 1.1e-11 75.9 113 46.0
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 1.9e-11 75.1 110 43.6
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 2.5e-11 74.7 46 73.9
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 7.4e-11 73.2 44 79.5
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 9.7e-11 72.8 42 85.7
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 1.3e-10 72.4 40 87.5
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 1.3e-10 72.4 252 29.8
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.2e-10 71.6 39 87.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 2.2e-10 71.6 39 87.2
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 2.2e-10 71.6 39 87.2
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.3e-09 67.0 58 50.0
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 5.3e-09 67.0 100 48.0
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 1.2e-08 65.9 54 64.8
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 1.5e-08 65.5 64 59.4
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 4.5e-08 63.9 200 31.0
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 7.7e-08 63.2 53 64.2
SHI35501 Sapria himalayana HOM05D004479 ORTHO05D005597 1.0e-07 62.8 103 41.7
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 2.2e-07 61.6 40 82.5
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 2.2e-07 61.6 40 82.5
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 2.2e-07 61.6 40 82.5
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 2.2e-07 61.6 49 67.3
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 2.9e-07 61.2 49 69.4
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 1.9e-06 58.5 68 51.5
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 1.9e-06 58.5 69 59.4
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 7.2e-06 56.6 43 62.8


User provided reference genes

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