Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.7e-204 716.1 442 100.0
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 1.4e-142 510.4 466 67.4
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 9.1e-134 481.1 452 71.0
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 7.7e-133 478.0 460 67.2
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.8e-129 466.8 452 65.5
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 5.2e-129 465.3 452 68.1
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 5.2e-129 465.3 459 68.8
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 1.5e-128 463.8 464 69.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.6e-128 463.0 457 62.4
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.3e-127 460.7 461 67.7
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 4.9e-127 458.8 452 65.3
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 1.4e-126 457.2 455 65.9
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.8e-126 456.8 461 62.9
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 2.7e-125 453.0 453 69.8
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 3.5e-125 452.6 449 69.0
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 5.9e-125 451.8 452 67.5
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.0e-124 451.1 457 66.5
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.1e-123 447.6 455 67.5
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 1.1e-123 447.6 454 66.5
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.5e-123 447.2 450 67.3
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.3e-123 446.0 450 60.2
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 5.6e-123 445.3 463 58.7
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 7.3e-123 444.9 456 66.0
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 9.5e-123 444.5 451 67.4
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 4.7e-122 442.2 460 61.3
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 4.7e-122 442.2 460 61.3
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.4e-121 440.7 454 58.6
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.8e-121 440.3 443 67.9
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 3.1e-121 439.5 452 63.1
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 3.4e-120 436.0 466 65.7
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 4.4e-120 435.6 448 63.6
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.7e-119 432.6 443 68.8
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 8.3e-119 431.4 449 66.4
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 9.2e-118 427.9 462 60.4
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.0e-117 426.8 454 60.6
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.9e-115 420.2 470 59.1
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 7.3e-115 418.3 451 62.1
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 2.6e-112 409.8 451 58.8
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 4.4e-112 409.1 457 61.9
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.9e-111 406.4 447 62.4
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.6e-109 400.6 456 58.8
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.1e-109 400.2 449 64.1
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.1e-109 400.2 449 64.1
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-108 397.9 455 63.1
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.7e-108 397.1 461 58.1
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 3.3e-107 392.9 445 61.6
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 6.2e-106 388.7 456 59.9
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 8.1e-106 388.3 456 60.5
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 1.8e-105 387.1 456 59.9
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 5.2e-105 385.6 419 61.8
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.5e-104 384.0 432 61.8
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 2.0e-104 383.6 456 59.9
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 2.2e-103 380.2 451 54.3
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 1.9e-102 377.1 449 53.5
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.4e-102 376.7 432 63.4
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 5.4e-102 375.6 451 61.0
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 7.1e-102 375.2 444 51.6
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 3.5e-101 372.9 451 60.5
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 1.8e-97 360.5 430 50.5
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 9.9e-96 354.8 447 57.9
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 8.7e-92 341.7 428 60.0
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.4e-88 329.7 451 57.0
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 5.8e-88 328.9 384 62.2
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.7e-87 327.4 460 52.6
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.4e-86 324.3 444 47.5
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 5.3e-81 305.8 443 54.6
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 5.3e-81 305.8 457 56.9
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 2.0e-80 303.9 439 49.2
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 8.4e-79 298.5 442 42.8
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 5.1e-76 289.3 459 52.5
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 8.7e-76 288.5 429 53.1
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.1e-74 283.9 444 51.6
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.8e-73 280.8 232 62.9
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.1e-73 280.0 440 44.8
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-59 235.0 350 58.6
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.4e-57 228.0 453 51.7
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 3.4e-56 223.4 464 47.0
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 7.7e-56 222.2 441 45.1
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.7e-50 204.5 150 64.0
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.7e-50 204.5 150 64.0
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.1e-41 175.3 471 36.1
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 5.3e-41 172.9 264 44.3
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 6.5e-39 166.0 264 39.4
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.5e-38 164.9 288 38.2
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.9e-38 164.5 264 41.7
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 9.4e-38 162.2 269 39.4
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.6e-37 161.4 266 38.7
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.6e-37 161.4 266 38.7
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 4.7e-37 159.8 297 36.4
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-36 158.7 282 38.7
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.0e-36 158.7 282 38.7
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.4e-36 158.3 278 38.5
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.4e-36 158.3 270 41.5
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 1.8e-36 157.9 192 45.8
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 3.0e-36 157.1 204 46.6
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 3.0e-36 157.1 126 57.1
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.0e-36 157.1 143 52.4
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 3.0e-36 157.1 455 35.2
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 4.0e-36 156.8 153 51.0
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 4.0e-36 156.8 164 50.0
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 5.2e-36 156.4 145 52.4
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 6.7e-36 156.0 126 57.1
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 8.8e-36 155.6 314 40.1
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.1e-35 155.2 136 54.4
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.1e-35 155.2 151 53.0
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 2.0e-35 154.5 264 37.5
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.6e-35 154.1 263 41.1
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 2.6e-35 154.1 277 39.4
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 3.3e-35 153.7 131 53.4
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 3.3e-35 153.7 266 40.2
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 4.4e-35 153.3 126 55.6
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 4.4e-35 153.3 288 36.1
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 4.4e-35 153.3 126 56.3
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.4e-35 153.3 212 43.4
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 7.5e-35 152.5 143 49.0
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 7.5e-35 152.5 131 53.4
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 7.5e-35 152.5 299 35.8
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 9.7e-35 152.1 143 51.7
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 9.7e-35 152.1 143 51.7
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.3e-34 151.8 264 36.4
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.3e-34 151.8 272 37.1
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.3e-34 151.8 126 54.8
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.2e-34 151.0 126 54.0
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 4.8e-34 149.8 169 45.0
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 4.8e-34 149.8 133 51.9
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 6.3e-34 149.4 128 52.3
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 6.3e-34 149.4 128 52.3
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.3e-34 149.4 267 39.0
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-33 148.7 151 49.7
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 1.4e-33 148.3 263 38.0
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.8e-33 147.9 262 39.7
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.4e-33 147.5 298 34.9
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.4e-33 147.5 128 53.9
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.1e-33 146.7 263 38.0
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 7.0e-33 146.0 288 37.8
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 7.0e-33 146.0 265 38.9
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 7.0e-33 146.0 308 35.7
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 9.1e-33 145.6 149 48.3
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 9.1e-33 145.6 419 32.7
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.2e-32 145.2 151 49.0
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.0e-32 144.4 305 35.7
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.0e-31 142.1 128 51.6
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.3e-31 141.7 128 57.8
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.2e-31 141.0 252 38.9
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.8e-31 140.2 278 37.8
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.9e-30 137.9 268 38.4
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 3.2e-30 137.1 162 43.2
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.2e-30 137.1 246 39.8
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 9.4e-30 135.6 298 35.2
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.1e-29 134.4 296 34.8
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 2.7e-29 134.0 78 83.3
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.7e-29 133.3 318 33.3
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 5.2e-28 129.8 450 30.9
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 8.8e-28 129.0 234 35.9
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 8.8e-28 129.0 234 35.9
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 7.5e-27 125.9 266 33.8
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 7.2e-22 109.4 379 45.9
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 1.5e-19 101.7 163 45.4
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 2.2e-10 71.2 83 53.0
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 3.0e-07 60.8 59 52.5


User provided reference genes

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