Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 2105.9 1045 100.0
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1505.7 1042 69.9
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1496.5 1048 70.4
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1496.1 1055 69.6
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1486.9 1022 70.6
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1485.3 1044 69.7
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1480.7 1045 69.0
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1479.9 1043 68.9
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1471.1 1042 68.4
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1458.0 1048 68.3
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1453.7 1042 68.3
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1453.0 1040 68.9
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1451.8 1050 66.8
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1447.6 1074 67.5
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1446.4 1047 67.7
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1430.2 1042 66.9
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1423.3 1043 66.3
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1415.6 1041 65.6
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1415.2 1042 65.9
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1406.3 1043 66.6
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1403.7 1045 65.5
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1402.9 1042 66.6
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1400.6 1046 65.8
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1399.0 1044 65.7
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1398.6 1046 65.8
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1398.3 1043 66.1
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1397.1 1049 64.9
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1396.7 1042 65.1
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1392.9 1053 65.2
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1387.9 1046 65.2
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1387.1 1050 64.3
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1385.9 1045 64.8
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1384.8 1046 65.0
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1379.0 1065 65.2
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1374.4 1053 64.4
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1371.3 1158 60.5
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1370.9 1051 64.1
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1369.8 1062 63.3
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1369.0 1045 64.4
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1367.8 1041 65.2
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1367.1 1052 63.9
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1364.7 1051 63.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1364.4 1043 64.0
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1353.2 1041 63.8
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1346.3 1041 63.2
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1340.9 1040 63.7
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1335.9 1056 63.4
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1335.9 1086 62.3
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1332.8 1010 64.4
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1331.2 1046 63.8
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1328.2 1062 62.4
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1327.8 1043 63.0
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1323.5 1046 62.1
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1318.5 1040 62.3
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1314.3 1046 62.7
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1314.3 1040 62.0
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1313.9 1074 60.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1310.0 1040 62.5
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1309.3 1057 62.2
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1306.6 1040 62.4
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1305.4 1057 60.5
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1300.8 1057 60.3
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1298.5 1040 62.1
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1298.5 1040 62.1
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1295.4 1078 60.6
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1295.4 1043 61.5
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1295.4 1090 60.6
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1291.6 1045 60.2
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1291.2 1049 60.3
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1283.1 1079 58.9
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1280.4 1100 58.5
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1278.8 1126 57.9
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1278.5 1045 59.9
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1273.8 1050 60.7
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1260.7 1051 59.5
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1250.0 1041 59.4
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1249.6 1044 60.3
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1247.6 1041 59.2
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1243.4 1045 59.3
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1202.2 1052 58.3
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1200.7 1039 58.5
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1200.7 1168 54.8
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1199.9 1051 58.5
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1196.4 1028 57.9
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1162.1 1048 54.9
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1157.1 1135 53.4
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1149.0 1044 56.4
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1147.5 1024 55.4
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1131.3 850 64.9
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1099.0 1037 54.1
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 4.1e-302 1041.6 870 59.3
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 2.3e-300 1035.8 1043 53.3
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.9e-279 965.7 1017 49.4
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 7.9e-277 957.6 680 67.1
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-274 949.9 896 55.4
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.1e-265 920.6 880 56.0
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 5.7e-251 871.7 1059 46.0
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.7e-231 807.0 1056 41.6
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.2e-221 774.2 733 53.6
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 2.4e-217 760.0 704 54.4
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 6.1e-213 745.3 541 68.4
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 6.6e-199 698.7 722 52.1
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 8.6e-199 698.4 812 46.8
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.5e-198 696.8 723 48.8
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.4e-195 686.4 511 65.8
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.4e-185 653.7 660 51.2
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 2.3e-183 647.1 1045 38.9
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 1.6e-181 641.0 835 41.8
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 5.1e-175 619.4 1015 36.3
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.1e-172 611.7 523 58.1
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 9.9e-171 605.1 864 39.0
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 5.1e-167 592.8 494 61.3
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 7.4e-166 589.0 595 52.4
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 3.0e-159 567.0 378 71.4
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 6.2e-157 559.3 477 59.5
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.4e-153 548.1 501 54.7
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 5.2e-127 459.9 351 63.0
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.3e-119 434.5 342 63.7
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.5e-113 414.5 854 33.7
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 3.6e-112 410.6 446 48.9
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 8.0e-104 382.9 341 58.9
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 1.9e-97 361.7 1150 27.6
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 5.6e-81 307.0 227 66.1
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 6.2e-80 303.5 258 58.5
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.5e-73 282.3 281 54.8
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 3.5e-67 261.2 218 56.4
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.3e-66 259.2 177 70.1
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 5.1e-66 257.3 268 51.5
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 4.3e-65 254.2 358 43.3
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 4.0e-63 247.7 948 26.9
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 2.2e-61 241.9 333 42.9
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-60 239.6 392 40.8
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.2e-60 238.0 204 54.9
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.1e-55 223.0 1163 23.5
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.4e-52 211.8 167 60.5
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 6.0e-51 207.2 321 40.5
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 3.7e-48 198.0 211 50.7
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 2.5e-44 185.3 122 71.3
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 9.3e-36 156.8 328 32.3
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.0e-34 153.3 195 45.1
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 5.7e-33 147.5 113 68.1
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 5.9e-30 137.5 85 76.5
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 2.9e-29 135.2 97 68.0
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 7.4e-25 120.6 154 44.8
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.7e-24 119.4 101 56.4
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 3.7e-24 118.2 81 67.9
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 1.8e-23 115.9 165 42.4
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 6.9e-23 114.0 97 59.8
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 2.9e-21 108.6 165 35.8
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 2.7e-19 102.1 90 56.7
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.0e-18 100.1 83 49.4
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 9.7e-17 93.6 126 42.1
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 3.7e-16 91.7 104 47.1
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 9.1e-15 87.0 70 58.6
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 1.0e-10 73.6 83 47.0
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 2.6e-09 68.9 44 72.7
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 7.0e-07 60.8 77 49.4


User provided reference genes

Program Settings