Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.7e-126 456.1 234 100.0
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 5.8e-79 298.1 229 67.2
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.8e-75 286.6 233 62.2
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.5e-74 283.5 235 63.0
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 5.6e-74 281.6 229 65.1
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 7.4e-74 281.2 235 60.4
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 9.6e-74 280.8 231 63.2
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 9.6e-74 280.8 229 62.9
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.3e-73 280.4 229 63.3
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 4.8e-73 278.5 229 62.9
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 6.2e-73 278.1 234 63.7
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 2.4e-72 276.2 235 63.4
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.0e-71 273.1 232 61.2
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 4.5e-71 271.9 232 62.1
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.3e-70 270.4 234 59.8
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.7e-70 270.0 234 58.1
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 2.9e-70 269.2 236 60.6
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.9e-69 266.5 237 58.2
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.4e-69 266.2 196 66.8
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.2e-69 265.8 238 59.2
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 3.2e-69 265.8 229 62.4
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 7.1e-69 264.6 234 56.8
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 9.3e-69 264.2 234 59.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 9.3e-69 264.2 235 59.6
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.2e-68 263.8 234 58.1
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 2.7e-68 262.7 234 57.3
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 3.5e-68 262.3 230 58.3
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.6e-68 261.9 203 64.0
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 7.9e-68 261.2 226 60.6
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.3e-67 260.4 203 63.5
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.8e-67 260.0 235 59.1
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 8.7e-67 257.7 234 59.0
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.5e-66 256.9 228 56.6
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.5e-66 256.9 234 54.7
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 1.9e-66 256.5 235 58.3
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 3.3e-66 255.8 219 59.8
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 4.3e-66 255.4 232 59.5
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.6e-66 255.0 232 59.1
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.6e-66 255.0 232 59.1
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.3e-65 253.8 232 58.6
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.1e-65 253.1 235 57.4
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.8e-65 252.7 236 57.6
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 4.8e-65 251.9 228 59.2
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.1e-64 250.8 232 56.9
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.8e-64 250.0 230 57.4
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 1.8e-64 250.0 234 53.8
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 3.1e-64 249.2 239 54.4
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 5.3e-64 248.4 237 56.1
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 5.3e-64 248.4 240 54.6
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 6.9e-64 248.1 234 55.1
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 9.0e-64 247.7 225 58.7
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.5e-63 246.9 234 53.4
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 2.0e-63 246.5 240 54.2
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.0e-63 246.5 240 54.2
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.0e-63 246.5 227 56.4
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 2.6e-63 246.1 176 68.2
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 4.5e-63 245.4 236 54.7
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 4.5e-63 245.4 234 58.5
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 5.8e-63 245.0 230 54.3
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 7.6e-63 244.6 230 56.1
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 7.6e-63 244.6 234 56.4
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.0e-62 244.2 197 61.4
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.0e-62 244.2 227 56.4
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 6.5e-62 241.5 235 52.8
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 6.5e-62 241.5 236 57.6
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 8.4e-62 241.1 236 53.4
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 1.1e-61 240.7 192 62.5
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 2.5e-61 239.6 235 55.3
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 9.3e-61 237.7 231 52.8
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 9.3e-61 237.7 219 55.7
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.2e-60 237.3 258 50.4
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 1.6e-60 236.9 226 54.4
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 2.1e-60 236.5 223 55.6
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 3.5e-60 235.7 230 54.8
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 4.6e-60 235.3 201 59.7
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 4.6e-60 235.3 230 52.6
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 1.0e-59 234.2 230 52.2
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.0e-59 234.2 247 52.2
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.8e-59 233.4 230 51.7
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 1.9e-58 229.9 203 56.7
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 2.5e-58 229.6 234 51.7
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.3e-58 229.2 229 52.0
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 4.3e-58 228.8 194 55.2
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 7.4e-58 228.0 201 55.2
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.3e-57 227.3 194 56.7
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.6e-57 226.9 244 52.9
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 2.1e-57 226.5 194 54.1
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.1e-57 226.5 230 53.5
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.1e-57 226.5 193 61.7
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 2.8e-57 226.1 194 54.1
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.8e-57 226.1 229 52.4
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 4.1e-56 222.2 194 54.1
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 6.9e-56 221.5 256 52.7
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 9.0e-56 221.1 194 58.2
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 9.0e-56 221.1 236 50.0
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.5e-55 220.3 194 52.1
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.0e-55 219.9 176 61.4
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.6e-55 219.5 202 54.5
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 2.6e-55 219.5 230 52.2
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 3.4e-55 219.2 251 47.8
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.9e-55 218.4 232 52.6
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.0e-54 217.6 239 50.2
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.3e-54 217.2 195 53.3
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.3e-54 217.2 181 55.8
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.3e-54 217.2 195 53.3
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.2e-54 216.5 231 49.4
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 2.9e-54 216.1 181 55.8
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 2.9e-54 216.1 195 53.3
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 5.5e-53 211.8 195 53.3
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 5.5e-53 211.8 234 50.4
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 5.5e-53 211.8 227 51.5
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.2e-52 210.7 181 53.0
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 4.3e-50 202.2 260 44.2
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.4e-48 197.2 233 48.5
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.2e-47 194.1 181 54.7
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.4e-47 192.6 142 65.5
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 4.5e-47 192.2 180 53.3
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.6e-44 183.7 226 46.9
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 4.6e-44 182.2 160 55.6
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 7.4e-42 174.9 131 65.6
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 7.4e-42 174.9 188 49.5
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.8e-40 170.2 233 44.6
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 3.1e-40 169.5 163 52.8
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 4.5e-39 165.6 231 44.2
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.0e-38 164.5 234 41.5
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.9e-37 160.2 245 39.2
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 7.4e-34 148.3 131 57.3
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 8.2e-33 144.8 245 36.7
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.6e-31 140.6 152 47.4
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.2e-30 136.7 184 41.8
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 8.5e-30 134.8 223 38.1
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.1e-28 130.2 185 40.5
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 3.6e-28 129.4 179 41.9
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 5.2e-27 125.6 243 35.4
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.1e-24 117.9 146 43.8
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.5e-21 107.5 77 70.1
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.2e-21 106.3 116 48.3
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 7.5e-18 95.1 88 55.7
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 7.7e-15 85.1 95 42.1
MCO12G415 Micromonas commoda HOM05D004951 ORTHO05D005840 8.0e-12 75.1 163 31.3
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 2.2e-09 67.0 74 43.2
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 2.4e-08 63.5 139 32.4
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 2.0e-07 60.5 51 64.7
FAN27G0705 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.5e-07 59.3 98 35.7
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 5.0e-06 55.8 77 37.7
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 5.0e-06 55.8 36 72.2


User provided reference genes

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