Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 3.4e-121 438.3 222 100.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 4.5e-105 384.8 218 86.7
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 7.6e-105 384.0 219 86.3
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 7.6e-105 384.0 218 86.7
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.9e-104 382.1 222 85.1
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 6.5e-104 380.9 221 86.4
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.4e-103 379.8 220 85.9
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 7.2e-103 377.5 220 84.1
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.6e-102 376.3 220 84.5
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.6e-102 376.3 219 83.6
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 2.1e-102 375.9 220 83.6
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.1e-102 375.9 219 84.5
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 2.7e-102 375.6 220 83.6
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 6.1e-102 374.4 212 87.7
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 7.9e-102 374.0 220 84.1
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.3e-101 373.2 219 84.5
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.8e-101 372.9 218 84.4
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 3.9e-101 371.7 220 84.1
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 5.1e-101 371.3 220 84.5
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 8.7e-101 370.5 212 85.8
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.5e-100 369.8 220 82.3
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 9.7e-100 367.1 220 81.8
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.6e-99 366.3 220 81.4
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 2.2e-99 365.9 219 81.7
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 2.8e-99 365.5 220 81.4
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.8e-99 365.5 220 85.5
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.8e-99 365.5 219 82.6
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 3.7e-99 365.2 220 81.4
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 3.7e-99 365.2 220 81.8
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 6.3e-99 364.4 220 80.9
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 6.3e-99 364.4 219 81.7
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 6.3e-99 364.4 215 84.2
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 8.2e-99 364.0 220 80.9
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 8.2e-99 364.0 220 80.9
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 8.2e-99 364.0 222 82.0
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 8.2e-99 364.0 218 81.7
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.4e-98 363.2 220 80.5
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 1.4e-98 363.2 219 82.2
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.8e-98 362.8 254 72.8
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.8e-98 362.8 220 79.5
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 2.4e-98 362.5 234 79.1
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 2.4e-98 362.5 215 84.2
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.1e-98 362.1 219 81.7
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 3.1e-98 362.1 219 82.2
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 4.1e-98 361.7 217 82.9
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 4.1e-98 361.7 221 81.4
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 5.3e-98 361.3 220 79.5
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 6.9e-98 360.9 220 79.5
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 6.9e-98 360.9 220 79.5
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 6.9e-98 360.9 217 81.1
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 9.0e-98 360.5 220 80.0
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 9.0e-98 360.5 218 80.7
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 9.0e-98 360.5 216 81.9
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.2e-97 360.1 217 81.6
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.5e-97 359.8 220 80.5
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.0e-97 359.4 220 80.9
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 2.0e-97 359.4 217 80.6
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 2.6e-97 359.0 217 82.5
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.6e-97 359.0 216 81.5
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.6e-97 359.0 213 83.6
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 3.4e-97 358.6 219 78.5
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 5.9e-97 357.8 221 80.1
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.0e-96 357.1 219 79.9
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.3e-96 356.7 222 80.6
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.3e-96 356.7 220 80.0
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.3e-96 356.7 222 80.2
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 2.2e-96 355.9 220 80.0
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 3.8e-96 355.1 220 79.5
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 6.5e-96 354.4 218 80.7
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 6.5e-96 354.4 212 82.5
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.9e-95 352.8 212 82.5
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.9e-95 352.8 219 78.1
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 3.2e-95 352.1 212 82.1
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 5.5e-95 351.3 220 78.2
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 7.2e-95 350.9 218 78.9
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.2e-94 350.1 218 79.8
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.2e-94 350.1 220 78.6
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.1e-94 349.4 215 78.6
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 2.1e-94 349.4 223 75.3
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 2.7e-94 349.0 218 78.0
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.7e-94 349.0 220 77.7
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 3.6e-94 348.6 219 77.6
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 4.6e-94 348.2 223 74.9
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.4e-93 346.7 220 78.2
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.4e-93 346.7 220 78.2
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 8.8e-93 344.0 219 75.3
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 1.1e-92 343.6 220 75.9
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.5e-92 343.2 222 76.6
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.5e-92 343.2 220 75.9
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.5e-92 343.2 220 75.9
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.0e-92 342.8 218 76.6
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 2.0e-92 342.8 208 82.2
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 3.3e-92 342.0 220 75.5
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 3.3e-92 342.0 220 76.4
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 4.3e-92 341.7 268 67.2
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 5.7e-92 341.3 218 75.7
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 2.8e-91 339.0 218 75.2
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.8e-91 339.0 212 79.2
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 6.3e-91 337.8 210 77.1
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 5.3e-90 334.7 219 74.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 3.4e-89 332.0 266 65.4
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 4.5e-89 331.6 219 77.6
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 5.1e-85 318.2 219 72.6
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 9.7e-84 313.9 218 74.3
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 8.2e-83 310.8 211 72.0
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.1e-82 310.5 184 82.6
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 7.0e-82 307.8 211 71.1
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.2e-80 302.8 211 69.7
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.5e-79 300.1 219 67.1
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 4.2e-79 298.5 213 70.4
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 9.4e-79 297.4 220 66.4
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.0e-76 289.7 218 67.0
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.4e-76 288.5 177 78.5
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 7.5e-76 287.7 219 63.9
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.5e-73 278.9 179 73.7
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.0e-64 250.8 140 89.3
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 4.2e-63 245.4 200 62.0
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.5e-57 225.7 227 52.0
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 5.9e-57 224.9 145 76.6
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.9e-56 222.6 128 85.9
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 4.7e-54 215.3 125 84.0
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 5.2e-53 211.8 122 82.8
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 6.8e-53 211.5 122 85.2
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 4.3e-47 192.2 148 65.5
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.2e-44 184.1 124 72.6
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.0e-42 174.9 112 77.7
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.0e-41 173.3 108 75.9
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 7.8e-41 171.4 128 72.7
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.2e-36 157.5 92 80.4
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 9.8e-36 154.5 92 81.5
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.7e-33 146.4 90 77.8
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.7e-32 143.7 90 77.8
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.9e-31 140.2 164 46.3
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 7.3e-31 138.3 94 72.3
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.1e-29 132.9 219 37.0
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 1.5e-28 130.6 202 39.6
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 4.4e-28 129.0 219 36.1
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.9e-27 125.6 189 37.0
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 5.4e-26 122.1 77 76.6
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 1.2e-25 120.9 190 40.0
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 6.0e-25 118.6 187 36.9
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 5.1e-24 115.5 71 74.6
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 9.6e-23 111.3 198 36.4
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 6.2e-22 108.6 66 77.3
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.8e-21 107.1 61 83.6
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 3.1e-21 106.3 88 62.5
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 4.0e-21 105.9 194 35.6
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 5.2e-21 105.5 93 62.4
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 1.5e-20 104.0 70 72.9
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.0e-20 103.6 75 70.7
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.6e-20 103.2 202 33.7
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.4e-20 102.8 170 34.1
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 2.9e-19 99.8 83 65.1
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 4.2e-18 95.9 60 73.3
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 2.1e-17 93.6 80 60.0
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 7.8e-17 91.7 58 79.3
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.7e-16 90.5 51 84.3
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 2.1e-14 83.6 92 53.3
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.1e-14 83.6 53 79.2
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 3.6e-14 82.8 45 86.7
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 2.4e-13 80.1 68 58.8
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 2.4e-13 80.1 66 62.1
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 4.0e-13 79.3 65 60.0
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 5.3e-13 79.0 64 60.9
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 6.9e-13 78.6 92 50.0
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.2e-12 77.8 59 64.4
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 3.2e-10 69.7 57 61.4
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 5.4e-10 68.9 72 52.8
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 9.3e-10 68.2 39 84.6


User provided reference genes

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