Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 5.2e-204 714.1 357 100.0
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 6.8e-95 351.7 217 79.7
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.0e-94 350.1 217 79.3
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.4e-94 349.0 217 78.8
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.4e-94 349.0 217 78.8
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 4.4e-94 349.0 217 79.3
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 2.2e-93 346.7 217 77.9
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.2e-91 340.9 217 77.4
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.6e-91 340.5 211 78.7
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 5.9e-91 338.6 211 78.2
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 5.9e-91 338.6 193 83.4
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 6.5e-90 335.1 217 76.0
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 2.8e-88 329.7 218 74.8
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 1.0e-87 327.8 217 74.2
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 1.8e-87 327.0 217 73.3
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 4.4e-86 322.4 215 74.4
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.2e-85 320.1 215 74.0
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.2e-85 320.1 215 74.0
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 2.2e-85 320.1 215 74.0
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 2.2e-85 320.1 215 72.1
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 8.3e-85 318.2 215 71.6
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 1.1e-84 317.8 215 72.6
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 5.4e-84 315.5 241 66.8
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 5.4e-84 315.5 210 72.4
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 5.9e-83 312.0 215 73.0
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 7.8e-83 311.6 210 73.8
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 1.0e-82 311.2 210 73.3
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 1.7e-82 310.5 217 72.4
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 1.7e-82 310.5 215 71.2
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 2.3e-82 310.1 196 76.0
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 3.8e-82 309.3 255 63.5
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 8.6e-82 308.1 215 70.7
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.1e-81 307.8 250 61.6
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.1e-81 307.8 219 70.8
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 1.9e-81 307.0 193 76.7
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.9e-81 307.0 215 72.1
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 1.9e-81 307.0 195 75.9
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 2.5e-81 306.6 193 76.7
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 2.5e-81 306.6 214 69.6
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 4.3e-81 305.8 215 70.7
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 7.3e-81 305.1 210 70.5
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 7.3e-81 305.1 193 76.2
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 7.3e-81 305.1 214 69.6
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 2.1e-80 303.5 192 77.6
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 4.7e-80 302.4 217 69.1
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 1.4e-79 300.8 221 69.2
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 5.2e-79 298.9 217 67.7
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 8.9e-79 298.1 217 67.7
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 1.5e-78 297.4 217 68.2
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 4.4e-78 295.8 214 67.8
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 4.4e-78 295.8 217 66.4
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 7.5e-78 295.0 217 67.7
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 9.8e-78 294.7 217 66.8
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 1.3e-77 294.3 225 65.8
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 1.7e-77 293.9 217 67.3
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 2.9e-77 293.1 215 68.4
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 4.9e-77 292.4 232 65.5
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.1e-76 291.2 194 70.1
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.1e-76 291.2 201 72.1
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 1.4e-76 290.8 217 66.8
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 2.4e-76 290.0 217 71.0
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 3.2e-76 289.7 218 65.6
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 4.1e-76 289.3 217 67.3
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 7.0e-76 288.5 195 70.8
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 7.0e-76 288.5 192 73.4
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 9.2e-76 288.1 215 67.4
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 1.6e-75 287.3 245 61.2
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 2.0e-75 287.0 217 67.3
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 2.0e-75 287.0 217 66.8
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 3.5e-75 286.2 233 62.2
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 4.6e-75 285.8 217 66.8
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 4.6e-75 285.8 217 65.9
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 7.8e-75 285.0 217 64.5
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 7.8e-75 285.0 217 65.0
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 1.0e-74 284.6 217 65.0
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 2.3e-74 283.5 217 65.9
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 2.3e-74 283.5 217 64.5
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 5.0e-74 282.3 215 64.7
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 5.0e-74 282.3 217 64.1
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 8.6e-74 281.6 217 65.9
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 9.5e-73 278.1 210 65.7
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 9.5e-73 278.1 217 66.8
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 2.1e-72 276.9 210 67.1
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 2.8e-72 276.6 210 62.9
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.8e-72 276.6 210 67.1
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 3.6e-72 276.2 217 66.4
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 4.7e-72 275.8 215 61.9
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 1.4e-71 274.2 210 62.9
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 1.4e-71 274.2 217 64.5
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.4e-71 274.2 210 65.2
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 2.3e-71 273.5 198 68.7
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 2.3e-71 273.5 198 68.7
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 2.3e-71 273.5 198 68.7
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 1.2e-70 271.2 217 65.4
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 3.7e-69 266.2 196 68.4
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 7.0e-68 261.9 241 58.1
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 9.2e-68 261.5 198 68.7
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 2.3e-66 256.9 199 61.8
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 4.3e-65 252.7 195 65.6
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 7.3e-65 251.9 186 68.3
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.4e-63 247.7 207 58.9
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 1.2e-62 244.6 155 76.1
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 1.7e-61 240.7 198 59.6
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.9e-61 240.0 198 61.6
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 4.1e-60 236.1 156 73.1
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 1.6e-59 234.2 213 54.5
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 6.0e-59 232.3 217 54.4
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 3.0e-58 229.9 144 75.0
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 5.1e-58 229.2 191 59.2
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 5.6e-49 199.1 166 53.6
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.5e-46 191.0 210 53.3
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 7.6e-38 162.2 171 47.4
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 9.9e-38 161.8 140 62.9
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 3.8e-37 159.8 113 65.5
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 3.7e-32 143.3 186 37.1
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.4e-31 141.4 88 72.7
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 2.9e-29 133.7 167 40.1
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 3.7e-24 116.7 63 81.0
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 1.4e-23 114.8 178 36.5
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.2e-22 111.7 107 48.6
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 9.3e-20 102.1 227 31.7
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 7.9e-19 99.0 118 44.1
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 8.7e-18 95.5 94 59.6
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 9.7e-17 92.0 79 58.2
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 1.3e-13 81.6 88 55.7
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 2.9e-13 80.5 46 73.9
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 1.9e-12 77.8 62 56.5
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 2.5e-12 77.4 83 55.4
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 1.3e-10 71.6 56 58.9
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 3.3e-09 67.0 61 57.4
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.8e-08 63.9 41 75.6
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 2.4e-07 60.8 40 67.5
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 2.0e-06 57.8 154 30.5


User provided reference genes

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