Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 6.9e-194 681.0 505 100.0
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 4.3e-95 352.8 441 75.3
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 2.2e-91 340.5 473 67.7
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 3.8e-91 339.7 457 71.8
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 3.2e-90 336.7 490 67.3
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 1.6e-89 334.3 468 67.5
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 2.1e-89 334.0 475 69.7
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 3.5e-89 333.2 448 67.2
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 1.3e-88 331.3 446 70.9
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 3.9e-88 329.7 451 70.1
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 3.9e-88 329.7 477 63.7
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 1.9e-87 327.4 499 64.1
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 7.3e-87 325.5 474 59.7
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 1.6e-86 324.3 451 69.6
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.1e-86 322.0 446 70.0
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.0e-84 317.4 428 64.0
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 2.0e-84 317.4 428 63.8
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 4.5e-84 316.2 440 71.1
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 4.5e-84 316.2 440 70.9
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 1.3e-83 314.7 450 66.7
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 1.9e-82 310.8 440 68.0
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 9.3e-82 308.5 461 65.1
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 3.5e-81 306.6 451 66.5
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 1.0e-80 305.1 441 71.7
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 3.9e-80 303.1 473 63.2
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 3.9e-80 303.1 440 68.2
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 2.5e-79 300.4 467 63.2
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 3.3e-79 300.1 437 59.7
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 9.6e-79 298.5 441 71.2
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 3.6e-78 296.6 478 64.0
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 9.9e-76 288.5 475 55.6
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 3.2e-74 283.5 461 51.8
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 7.1e-74 282.3 425 55.1
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 9.6e-71 271.9 456 62.3
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 8.1e-70 268.9 441 51.7
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 8.4e-67 258.8 371 74.1
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 4.2e-66 256.5 472 59.1
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 7.1e-66 255.8 413 66.8
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 1.0e-64 251.9 473 56.9
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 1.3e-64 251.5 455 64.4
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 9.6e-63 245.4 484 55.6
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 9.6e-63 245.4 513 45.0
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 1.6e-62 244.6 484 58.5
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 2.1e-62 244.2 443 64.1
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.1e-61 241.9 180 66.7
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.8e-61 241.1 464 59.9
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.2e-60 238.4 381 66.4
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 3.4e-60 236.9 376 68.1
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 6.5e-59 232.6 381 68.8
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 1.4e-58 231.5 462 57.4
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 3.2e-58 230.3 483 52.0
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 5.5e-58 229.6 177 62.1
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 1.3e-56 224.9 180 58.9
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 1.3e-56 224.9 458 54.8
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 2.9e-51 207.2 480 51.2
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 5.0e-51 206.5 471 52.0
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 1.1e-50 205.3 471 51.6
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 9.4e-50 202.2 495 49.3
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 9.4e-50 202.2 480 50.8
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 2.1e-49 201.1 461 51.8
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 2.7e-49 200.7 368 67.1
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 7.9e-49 199.1 471 51.2
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 3.0e-48 197.2 429 52.0
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 3.4e-44 183.7 153 57.5
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 3.2e-42 177.2 471 48.8
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 2.7e-41 174.1 420 55.5
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 6.3e-38 162.9 356 69.4
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 1.4e-37 161.8 131 57.3
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 3.8e-35 153.7 376 68.1
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 3.0e-16 90.9 92 52.2
Gorai.001G135500 Gossypium raimondii HOM05D007897 ORTHO05D010061 2.6e-15 87.8 90 51.1
Gohir.D07G125650 Gossypium hirsutum HOM05D007897 ORTHO05D010061 3.4e-15 87.4 89 51.7
Gohir.D13G096925 Gossypium hirsutum HOM05D007897 ORTHO05D010061 5.7e-15 86.7 89 51.7
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 9.8e-15 85.9 126 39.7
Gohir.D01G146401 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.8e-13 81.6 90 47.8
Gorai.002G182100 Gossypium raimondii HOM05D007897 ORTHO05D010061 4.1e-13 80.5 88 47.7
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.7e-11 75.1 149 35.6
Gohir.D02G105900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.3e-11 74.7 52 61.5
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 2.9e-11 74.3 154 34.4
FAN22G1963 Fragaria x ananassa HOM05D007897 ORTHO05D010061 3.8e-11 73.9 67 53.7
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 8.6e-11 72.8 154 34.4
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 8.6e-11 72.8 152 34.2
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 8.6e-11 72.8 158 34.8
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 1.1e-10 72.4 156 34.0
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 2.5e-10 71.2 154 33.8
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 5.6e-10 70.1 154 33.1
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 5.6e-10 70.1 154 33.1
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 5.6e-10 70.1 154 33.1
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 7.3e-10 69.7 154 33.1
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 7.3e-10 69.7 162 30.9
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 1.2e-09 68.9 156 32.7
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 1.2e-09 68.9 159 32.7
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 1.2e-09 68.9 147 32.7
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 1.2e-09 68.9 157 33.8
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.2e-09 68.9 98 36.7
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.6e-09 68.6 154 32.5
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.1e-09 68.2 147 33.3
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 2.1e-09 68.2 157 31.8
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 2.1e-09 68.2 147 33.3
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 2.1e-09 68.2 147 34.0
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.8e-09 67.8 147 32.7
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 2.8e-09 67.8 154 32.5
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 2.8e-09 67.8 162 32.1
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 2.8e-09 67.8 156 32.1
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 3.6e-09 67.4 147 32.7
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 3.6e-09 67.4 147 32.7
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 3.6e-09 67.4 98 35.7
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 4.7e-09 67.0 154 31.8
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 4.7e-09 67.0 162 32.1
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 4.7e-09 67.0 152 32.9
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 4.7e-09 67.0 147 32.7
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 6.1e-09 66.6 154 31.8
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 6.1e-09 66.6 154 30.5
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 6.1e-09 66.6 154 30.5
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 8.0e-09 66.2 154 33.1
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 8.0e-09 66.2 154 33.1
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 8.0e-09 66.2 155 32.9
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 1.0e-08 65.9 154 33.1
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 1.0e-08 65.9 154 31.8
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.0e-08 65.9 147 32.7
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.4e-08 65.5 111 30.6
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 1.4e-08 65.5 156 32.7
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 1.8e-08 65.1 160 31.2
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 1.8e-08 65.1 147 32.7
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 2.3e-08 64.7 152 30.9
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 2.3e-08 64.7 154 31.8
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 3.0e-08 64.3 154 31.8
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 5.2e-08 63.5 147 32.7
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 6.8e-08 63.2 154 29.9
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 6.8e-08 63.2 154 30.5
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 6.8e-08 63.2 154 31.2
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 6.8e-08 63.2 154 33.8
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 8.9e-08 62.8 160 31.9
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 8.9e-08 62.8 147 32.0
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 2.0e-07 61.6 156 30.8
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.6e-07 61.2 154 33.1
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 2.6e-07 61.2 154 30.5
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 2.6e-07 61.2 154 31.2
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 3.4e-07 60.8 157 33.1
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 4.4e-07 60.5 154 32.5
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 4.4e-07 60.5 149 29.5
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 5.7e-07 60.1 148 33.1
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 7.5e-07 59.7 154 29.9
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.3e-06 58.9 130 30.0
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 1.7e-06 58.5 157 31.8
arahy.Tifrunner.gnm1.ann1.RRD271 Arachis hypogaea HOM05D007897 ORTHO05D010061 2.9e-06 57.8 49 59.2
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 2.9e-06 57.8 147 31.3
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 4.9e-06 57.0 154 30.5
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 8.3e-06 56.2 138 31.9


User provided reference genes

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