Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 1.2e-80 303.1 160 100.0
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.8e-47 193.0 165 65.5
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 1.5e-46 189.9 149 67.8
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 2.0e-46 189.5 166 66.3
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 2.2e-45 186.0 148 66.9
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 6.4e-45 184.5 118 79.7
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 8.4e-45 184.1 121 77.7
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 4.2e-44 181.8 166 60.8
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.2e-43 180.3 118 76.3
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 2.1e-43 179.5 122 74.6
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 2.7e-43 179.1 143 67.1
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 6.0e-43 177.9 131 72.5
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 1.0e-42 177.2 113 80.5
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.3e-42 176.8 158 61.4
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.7e-42 176.4 131 71.8
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 1.7e-42 176.4 117 76.9
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 3.9e-42 175.3 147 66.0
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 5.1e-42 174.9 150 64.7
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 1.5e-41 173.3 147 64.6
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 1.9e-41 172.9 109 79.8
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.9e-41 172.9 117 76.1
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 2.5e-41 172.6 119 74.8
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 3.3e-41 172.2 153 60.1
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 4.3e-41 171.8 118 72.0
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 5.6e-41 171.4 147 63.9
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 7.3e-41 171.0 154 63.0
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 7.3e-41 171.0 117 73.5
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 9.6e-41 170.6 111 75.7
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.6e-40 168.7 152 60.5
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 6.2e-40 167.9 156 60.9
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 6.2e-40 167.9 145 62.8
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 6.2e-40 167.9 122 70.5
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 6.2e-40 167.9 122 70.5
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 6.2e-40 167.9 122 70.5
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 1.1e-39 167.2 114 73.7
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.4e-39 166.8 145 64.8
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 1.8e-39 166.4 111 75.7
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 5.3e-39 164.9 118 71.2
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 6.9e-39 164.5 150 60.7
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 9.0e-39 164.1 159 59.1
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 2.0e-38 162.9 115 72.2
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 2.0e-38 162.9 118 70.3
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 5.8e-38 161.4 121 68.6
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 5.8e-38 161.4 125 68.8
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 7.6e-38 161.0 113 72.6
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 2.9e-37 159.1 123 68.3
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 2.9e-37 159.1 123 68.3
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 3.8e-37 158.7 140 60.7
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 3.8e-37 158.7 127 61.4
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 4.9e-37 158.3 123 68.3
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 4.9e-37 158.3 123 68.3
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 6.4e-37 157.9 140 61.4
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 8.4e-37 157.5 172 52.3
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 1.1e-36 157.1 132 63.6
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.4e-36 156.8 139 61.9
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.9e-36 156.4 170 52.4
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 3.2e-36 155.6 164 55.5
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 3.2e-36 155.6 116 69.8
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 4.2e-36 155.2 118 69.5
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 4.2e-36 155.2 110 70.9
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 4.2e-36 155.2 124 66.1
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 5.4e-36 154.8 114 70.2
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 9.3e-36 154.1 140 61.4
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 1.6e-35 153.3 118 69.5
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 1.6e-35 153.3 107 72.0
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 2.7e-35 152.5 114 68.4
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 2.7e-35 152.5 114 68.4
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 2.7e-35 152.5 114 68.4
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 3.5e-35 152.1 109 70.6
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 7.8e-35 151.0 119 66.4
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 7.8e-35 151.0 142 59.9
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 1.7e-34 149.8 155 54.8
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.7e-34 149.8 118 69.5
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 2.3e-34 149.4 125 65.6
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 2.3e-34 149.4 125 65.6
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 2.3e-34 149.4 132 62.9
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 3.0e-34 149.1 131 61.8
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.0e-34 149.1 143 61.5
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 6.6e-34 147.9 146 56.8
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 8.7e-34 147.5 144 59.0
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 1.5e-33 146.7 112 67.9
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.9e-33 146.4 128 64.1
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 3.3e-33 145.6 109 67.9
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 9.6e-33 144.1 104 70.2
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 3.6e-32 142.1 131 57.3
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.2e-32 141.4 170 50.0
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.1e-32 141.0 91 78.0
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 1.8e-31 139.8 121 62.0
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 1.8e-31 139.8 103 68.9
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 4.0e-31 138.7 155 53.5
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 9.0e-31 137.5 166 50.6
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 1.7e-29 133.3 90 71.1
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 1.7e-29 133.3 90 71.1
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.7e-29 133.3 122 57.4
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 3.8e-29 132.1 115 58.3
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 3.2e-28 129.0 91 71.4
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 4.2e-28 128.6 93 68.8
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 9.3e-28 127.5 111 55.0
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.8e-26 123.2 126 54.8
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.0e-26 122.5 129 55.0
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 5.1e-26 121.7 105 60.0
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 1.5e-25 120.2 137 51.8
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 2.1e-24 116.3 86 66.3
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 4.0e-23 112.1 148 50.7
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 6.9e-23 111.3 93 65.6
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 5.8e-22 108.2 150 40.7
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 9.9e-22 107.5 86 64.0
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 3.8e-21 105.5 76 64.5
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 8.4e-21 104.4 88 61.4
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 1.1e-20 104.0 68 75.0
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 2.5e-20 102.8 106 51.9
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 2.5e-20 102.8 122 46.7
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 2.3e-18 96.3 144 43.1
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 5.1e-18 95.1 79 65.8
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 8.7e-18 94.4 103 42.7
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 7.4e-17 91.3 98 48.0
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.7e-16 89.0 64 73.4
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.4e-15 87.0 60 75.0
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 9.0e-15 84.3 137 40.1
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 2.6e-14 82.8 69 59.4
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 1.0e-13 80.9 64 64.1
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 2.1e-11 73.2 68 60.3
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 2.7e-11 72.8 54 68.5
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 2.7e-11 72.8 68 60.3
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 2.7e-11 72.8 83 47.0
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 2.7e-11 72.8 83 47.0
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 1.6e-08 63.5 97 44.3
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 1.6e-08 63.5 97 44.3
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 2.8e-08 62.8 46 63.0
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 6.3e-08 61.6 97 43.3
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 1.4e-07 60.5 63 52.4
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 1.4e-07 60.5 97 43.3
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 5.3e-07 58.5 78 51.3
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 2.6e-06 56.2 89 40.4


User provided reference genes

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