Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 0.0e+00 1954.5 1022 100.0
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 0.0e+00 1183.3 1027 62.9
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 0.0e+00 1164.4 1023 61.0
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1147.1 1019 60.9
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1143.3 1016 60.4
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1120.9 1027 59.4
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1119.4 1016 59.6
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1097.4 1069 56.3
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1092.0 1022 57.4
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1082.0 985 58.1
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 5.7e-304 1047.7 1032 55.7
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 2.6e-301 1038.9 1022 55.3
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.4e-301 1038.5 1042 55.8
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 1.3e-300 1036.6 957 56.9
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 3.6e-298 1028.5 1025 54.8
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 6.7e-297 1024.2 1021 54.6
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.1e-296 1023.5 1027 54.7
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 4.1e-294 1015.0 1027 54.5
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 1.7e-292 1009.6 1020 53.2
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 5.1e-289 998.0 1017 53.1
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 5.7e-288 994.6 1027 52.3
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 1.4e-286 989.9 1027 52.3
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 3.8e-284 981.9 982 53.8
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 2.2e-279 966.1 1066 50.8
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.8e-278 963.0 1021 51.6
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 5.3e-278 961.4 987 52.9
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 5.9e-277 958.0 1021 53.3
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 1.0e-276 957.2 920 57.7
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 5.5e-275 951.4 1022 51.6
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 1.9e-267 926.4 1019 50.1
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 8.8e-265 917.5 895 54.9
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.2e-264 917.1 1019 50.1
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 2.6e-264 916.0 1026 49.0
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 2.0e-261 906.4 1054 49.4
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 2.9e-260 902.5 1011 49.4
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 1.8e-257 893.3 1022 49.5
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 2.6e-256 889.4 1084 47.8
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 9.2e-254 880.9 1022 49.9
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 1.2e-253 880.6 1037 47.3
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 1.6e-253 880.2 1017 48.0
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 1.0e-252 877.5 1012 47.8
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 1.3e-252 877.1 1033 47.7
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 1.3e-252 877.1 1025 49.7
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 3.9e-252 875.5 1047 48.2
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 5.0e-252 875.2 973 49.7
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 5.0e-252 875.2 996 48.2
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 9.5e-251 870.9 1060 46.0
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 2.3e-249 866.3 1018 48.4
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 4.0e-249 865.5 1007 49.2
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 1.3e-247 860.5 978 49.0
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 3.2e-246 855.9 1016 47.2
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 9.2e-246 854.4 988 48.7
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 2.7e-245 852.8 1021 46.8
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 1.8e-241 840.1 990 47.6
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 4.0e-241 839.0 1029 46.4
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 1.4e-238 830.5 916 51.5
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 8.6e-236 821.2 905 50.1
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 2.3e-233 813.1 980 47.7
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 5.2e-233 812.0 1028 46.7
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 1.2e-232 810.8 851 52.9
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 7.6e-232 808.1 999 46.1
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 2.2e-231 806.6 1019 45.1
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 5.4e-230 802.0 1019 44.9
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 2.1e-229 800.0 1010 45.5
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 8.6e-228 794.7 1011 45.7
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 2.5e-227 793.1 1017 45.0
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.2e-226 790.8 1013 44.6
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.6e-226 790.4 1012 44.8
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.4e-225 787.3 709 58.3
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 3.1e-225 786.2 1014 44.7
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 8.9e-225 784.6 1040 44.0
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.7e-223 780.4 916 48.4
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 3.8e-223 779.2 1031 44.2
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 8.4e-223 778.1 909 48.2
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 1.4e-222 777.3 1020 43.7
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 5.1e-220 768.8 927 46.3
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 5.1e-220 768.8 1023 43.0
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 5.1e-220 768.8 1005 43.7
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 6.6e-220 768.5 953 45.6
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 1.1e-219 767.7 935 48.1
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 4.3e-219 765.8 1029 44.2
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 9.0e-217 758.1 896 46.3
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 1.7e-215 753.8 1037 42.0
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 2.9e-215 753.1 1012 43.3
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 3.3e-211 739.6 786 51.1
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 2.2e-207 726.9 1039 43.3
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 9.3e-206 721.5 943 45.1
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 1.3e-204 717.6 1044 42.6
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 1.4e-193 681.0 1025 41.0
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 3.4e-192 676.4 1021 40.0
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 3.2e-190 669.8 833 46.2
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 1.6e-189 667.5 919 42.8
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 9.7e-187 658.3 673 52.5
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 2.0e-176 624.0 678 49.4
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 3.8e-167 593.2 1035 36.6
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 3.1e-161 573.5 843 39.9
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 2.9e-159 567.0 954 39.6
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 4.0e-156 556.6 1069 36.3
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 3.2e-150 537.0 914 38.1
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 8.0e-133 479.2 934 34.0
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 4.1e-121 440.3 1023 31.5
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 2.0e-67 261.9 1020 26.3
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.2e-59 236.1 645 29.6
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 3.8e-58 231.1 270 45.9
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 5.0e-58 230.7 190 61.1
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 2.2e-50 205.3 702 27.6
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.7e-45 189.1 337 37.7
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 1.6e-35 156.0 677 25.6
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 3.8e-34 151.4 145 57.2
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 9.5e-25 120.2 638 23.8
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 5.9e-19 100.9 144 40.3
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.3e-18 99.8 734 22.8
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 1.4e-12 79.7 121 38.0
Gohir.D01G124101 Gossypium hirsutum HOM05D021756 ORTHO05D018943 1.4e-07 63.2 69 49.3
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 4.0e-07 61.6 64 53.1
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 8.9e-07 60.5 106 34.0
Gorai.008G152700 Gossypium raimondii HOM05D021756 ORTHO05D018943 2.0e-06 59.3 64 48.4
Gohir.D04G085800 Gossypium hirsutum HOM05D017690 ORTHO05D015145 2.6e-06 58.9 56 55.4
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 4.4e-06 58.2 89 40.4
PGSC0003DMG400029639 Solanum tuberosum HOM05D006492 ORTHO05D035178 5.8e-06 57.8 47 63.8


User provided reference genes

Program Settings