Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 1.5e-88 329.7 194 100.0
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 1.6e-29 133.7 181 47.5
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 3.0e-28 129.4 181 48.1
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 1.1e-27 127.5 181 45.9
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 3.3e-27 125.9 130 54.6
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 4.7e-26 122.1 170 47.1
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.1e-25 119.4 169 43.8
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 8.9e-25 117.9 171 43.9
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.9e-25 117.9 169 43.8
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.9e-25 117.9 169 43.2
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.9e-25 117.9 169 43.8
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 3.4e-24 115.9 171 48.0
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 8.4e-23 111.3 172 41.9
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 1.4e-22 110.5 171 43.9
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 1.9e-22 110.2 179 41.3
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 5.4e-22 108.6 172 41.3
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 7.1e-22 108.2 132 49.2
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 9.2e-22 107.8 193 39.9
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 1.6e-21 107.1 174 43.1
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 1.6e-21 107.1 168 42.9
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.3e-20 104.0 174 39.7
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.7e-20 103.6 174 40.8
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 5.1e-20 102.1 175 40.0
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.5e-19 99.8 124 47.6
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 4.3e-19 99.0 171 38.6
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 7.3e-19 98.2 174 37.4
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 7.3e-19 98.2 176 37.5
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.6e-18 97.1 117 48.7
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 4.7e-18 95.5 172 38.4
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 4.7e-18 95.5 174 37.4
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 6.2e-18 95.1 165 39.4
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 1.1e-17 94.4 178 37.1
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 2.4e-17 93.2 179 34.6
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 3.1e-17 92.8 168 37.5
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.1e-17 92.8 174 35.6
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 3.1e-17 92.8 176 35.2
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.0e-17 92.4 171 35.1
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 6.9e-17 91.7 171 34.5
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 6.9e-17 91.7 174 35.1
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 8.9e-17 91.3 174 35.1
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 8.9e-17 91.3 183 36.6
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 8.9e-17 91.3 130 44.6
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 1.5e-16 90.5 173 31.2
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 2.0e-16 90.1 170 35.3
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 2.0e-16 90.1 125 44.8
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.4e-16 89.4 185 35.1
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 4.4e-16 89.0 174 35.6
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 4.4e-16 89.0 181 36.5
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 9.9e-16 87.8 180 35.6
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.7e-15 87.0 184 38.6
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 2.2e-15 86.7 174 33.9
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.2e-15 86.7 173 35.3
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 3.8e-15 85.9 171 36.8
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 4.9e-15 85.5 172 36.6
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 4.9e-15 85.5 169 33.7
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 6.4e-15 85.1 119 45.4
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 8.4e-15 84.7 175 33.7
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.1e-14 84.3 173 36.4
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.1e-14 84.3 173 36.4
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 1.1e-14 84.3 119 44.5
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 1.1e-14 84.3 124 41.9
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.4e-14 84.0 180 32.2
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.4e-14 83.2 177 35.0
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 2.4e-14 83.2 127 43.3
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.4e-14 83.2 185 32.4
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 3.2e-14 82.8 177 35.6
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 3.2e-14 82.8 162 35.2
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 4.2e-14 82.4 167 36.5
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 4.2e-14 82.4 172 41.3
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.2e-14 82.4 172 39.5
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.4e-14 82.0 183 33.3
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 7.1e-14 81.6 162 32.7
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.1e-14 81.6 169 41.4
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 9.3e-14 81.3 186 32.3
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.2e-13 80.9 183 32.8
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 2.1e-13 80.1 123 41.5
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 2.1e-13 80.1 170 34.7
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 4.6e-13 79.0 170 37.6
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 6.0e-13 78.6 170 36.5
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 6.0e-13 78.6 173 32.9
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.0e-12 77.8 172 33.1
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 1.3e-12 77.4 172 37.8
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 1.3e-12 77.4 170 36.5
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.3e-12 77.4 171 38.6
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 1.7e-12 77.0 168 35.1
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.3e-12 76.6 120 37.5
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.0e-12 76.3 177 32.8
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 3.0e-12 76.3 164 34.1
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 3.9e-12 75.9 121 40.5
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 3.9e-12 75.9 120 38.3
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 3.9e-12 75.9 131 40.5
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 5.1e-12 75.5 179 31.8
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 6.6e-12 75.1 173 35.3
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 8.7e-12 74.7 128 40.6
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 8.7e-12 74.7 111 42.3
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 1.1e-11 74.3 175 32.0
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 1.1e-11 74.3 176 32.4
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 1.9e-11 73.6 127 44.1
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 1.9e-11 73.6 112 41.1
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 2.5e-11 73.2 182 31.3
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 2.5e-11 73.2 127 44.9
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 4.3e-11 72.4 181 34.3
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 4.3e-11 72.4 166 34.3
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 4.3e-11 72.4 128 39.1
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 5.6e-11 72.0 127 37.0
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 9.6e-11 71.2 171 35.1
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 9.6e-11 71.2 171 35.1
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 1.3e-10 70.9 130 40.8
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 1.3e-10 70.9 130 40.8
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.3e-10 70.9 101 40.6
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 1.3e-10 70.9 164 33.5
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 2.1e-10 70.1 165 34.5
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 2.8e-10 69.7 130 35.4
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.6e-10 69.3 167 32.3
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.6e-10 69.3 111 39.6
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 4.8e-10 68.9 180 31.7
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 6.2e-10 68.6 170 34.1
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 6.2e-10 68.6 170 34.1
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 8.1e-10 68.2 130 39.2
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 1.4e-09 67.4 170 30.0
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 2.4e-09 66.6 170 33.5
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 2.4e-09 66.6 170 33.5
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 3.1e-09 66.2 170 34.1
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 3.1e-09 66.2 166 31.9
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 4.0e-09 65.9 118 35.6
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 4.0e-09 65.9 123 35.0
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 9.0e-09 64.7 125 38.4
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 1.2e-08 64.3 176 32.4
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.5e-08 63.9 177 32.8
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 2.0e-08 63.5 44 63.6
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 5.8e-08 62.0 101 37.6
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 9.9e-08 61.2 99 37.4
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.7e-07 60.5 106 42.5
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 1.7e-07 60.5 127 37.0
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 1.7e-07 60.5 127 37.0
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 2.4e-06 56.6 145 32.4
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 5.4e-06 55.5 97 38.1
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 5.4e-06 55.5 143 34.3


User provided reference genes

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