Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 3.6e-126 454.9 224 100.0
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 3.8e-43 179.1 219 51.1
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.9e-39 166.8 222 48.2
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 5.6e-39 165.2 222 47.7
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 7.4e-39 164.9 222 47.7
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.1e-38 163.3 222 47.3
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 4.0e-37 159.1 222 46.8
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 4.5e-36 155.6 222 45.9
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 2.9e-35 152.9 226 46.5
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 2.4e-34 149.8 225 45.8
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 4.2e-34 149.1 218 45.4
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 6.0e-33 145.2 218 44.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 3.9e-32 142.5 225 44.0
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 6.7e-32 141.7 223 43.9
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 2.5e-31 139.8 218 43.1
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 4.3e-31 139.0 218 43.6
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 5.6e-31 138.7 220 41.8
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 7.4e-31 138.3 217 40.1
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 9.6e-31 137.9 217 41.0
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.6e-30 137.1 217 40.6
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.6e-30 137.1 217 40.6
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 2.1e-30 136.7 217 40.6
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 3.7e-30 136.0 217 40.6
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 3.7e-30 136.0 217 40.6
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 1.4e-29 134.0 223 39.9
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 4.0e-29 132.5 222 41.4
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 5.3e-29 132.1 221 39.4
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.2e-27 126.7 224 39.7
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 2.2e-27 126.7 225 41.3
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 2.9e-27 126.3 221 42.5
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 6.5e-27 125.2 215 40.5
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.5e-26 123.2 215 40.9
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.2e-26 122.5 216 39.4
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 4.2e-26 122.5 227 37.9
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 9.3e-26 121.3 216 37.5
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 7.9e-25 118.2 221 37.6
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 7.9e-25 118.2 224 36.2
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 7.9e-25 118.2 221 38.0
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.0e-24 117.9 225 35.1
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.3e-24 117.5 218 35.3
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 1.3e-24 117.5 219 40.2
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 1.8e-24 117.1 252 37.3
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 3.0e-24 116.3 217 37.3
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 3.9e-24 115.9 219 39.7
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.1e-24 115.5 222 36.5
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 5.1e-24 115.5 221 34.8
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 8.7e-24 114.8 215 39.1
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.1e-23 114.4 225 34.7
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.5e-23 114.0 222 36.0
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 1.5e-23 114.0 233 39.1
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 3.3e-23 112.8 221 37.1
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 3.3e-23 112.8 217 36.4
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 3.3e-23 112.8 223 35.4
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 3.3e-23 112.8 221 36.2
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 4.3e-23 112.5 222 36.0
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 4.3e-23 112.5 221 36.7
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 4.3e-23 112.5 225 35.1
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 5.7e-23 112.1 255 35.3
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 5.7e-23 112.1 255 35.3
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 5.7e-23 112.1 225 34.2
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 9.6e-23 111.3 221 35.7
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 1.3e-22 110.9 220 35.0
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.6e-22 110.5 221 34.8
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.6e-22 110.5 221 35.3
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 2.1e-22 110.2 189 42.9
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 2.8e-22 109.8 213 35.2
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 3.7e-22 109.4 217 35.5
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.4e-21 107.5 221 36.2
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.4e-21 107.5 224 38.8
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 2.4e-21 106.7 215 39.1
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 4.1e-21 105.9 217 38.2
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 5.3e-21 105.5 228 35.1
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-20 104.4 221 33.9
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 1.2e-20 104.4 220 34.1
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.5e-20 104.0 217 38.7
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.5e-20 104.0 217 35.5
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 2.0e-20 103.6 222 35.1
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 2.0e-20 103.6 221 34.8
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.4e-20 102.8 230 32.6
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 3.4e-20 102.8 221 35.7
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 5.9e-20 102.1 219 36.1
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 7.6e-20 101.7 224 33.9
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 7.6e-20 101.7 212 36.8
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 1.0e-19 101.3 211 33.2
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.3e-19 100.9 219 36.1
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.7e-19 100.5 221 34.4
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 2.2e-19 100.1 227 33.0
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 2.2e-19 100.1 221 35.3
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 2.9e-19 99.8 213 34.7
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.9e-19 99.8 221 35.7
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.8e-19 99.4 220 37.7
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.8e-19 99.4 230 32.2
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.8e-19 99.4 215 34.4
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 6.5e-19 98.6 206 33.0
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 8.5e-19 98.2 219 32.9
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 8.5e-19 98.2 217 35.5
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 8.5e-19 98.2 223 37.2
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.1e-18 97.8 219 34.2
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.1e-18 97.8 231 33.8
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.4e-18 97.4 219 34.2
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 1.4e-18 97.4 227 34.4
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 1.9e-18 97.1 216 33.3
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-18 97.1 225 32.0
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 3.2e-18 96.3 221 34.4
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.2e-18 95.9 229 38.0
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.2e-18 95.9 229 38.0
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 4.2e-18 95.9 219 35.2
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 4.2e-18 95.9 219 35.2
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 5.5e-18 95.5 220 33.2
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.1e-17 93.6 208 34.1
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 2.1e-17 93.6 221 32.6
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 2.1e-17 93.6 219 34.2
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.1e-17 93.6 227 33.9
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.6e-17 92.4 225 32.9
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 6.1e-17 92.0 195 32.3
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 6.1e-17 92.0 221 35.7
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 7.9e-17 91.7 216 36.6
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 1.3e-16 90.9 230 32.2
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.3e-16 90.9 211 32.7
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 1.8e-16 90.5 222 34.2
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 2.3e-16 90.1 221 33.9
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 6.7e-16 88.6 225 33.3
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 8.7e-16 88.2 221 33.9
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 3.3e-15 86.3 223 35.0
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 3.3e-15 86.3 223 35.0
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 4.3e-15 85.9 199 36.2
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 4.3e-15 85.9 183 37.7
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 5.7e-15 85.5 215 34.9
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 7.4e-15 85.1 214 34.1
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.4e-15 85.1 217 32.3
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.3e-14 84.3 214 34.6
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.3e-14 84.3 224 35.3
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 1.3e-14 84.3 209 33.0
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.6e-14 84.0 114 47.4
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.2e-14 83.6 221 36.2
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 3.7e-14 82.8 222 36.9
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 3.7e-14 82.8 231 34.2
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.8e-14 82.4 218 31.7
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 1.1e-13 81.3 162 34.0
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.4e-13 80.9 223 33.6
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.8e-13 80.5 231 32.5
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.4e-13 80.1 214 33.6
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.4e-13 80.1 224 31.2
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.4e-13 80.1 214 33.6
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.1e-13 79.3 217 34.1
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.5e-12 77.4 159 33.3
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 2.0e-12 77.0 221 33.5
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 3.4e-12 76.3 235 29.4
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.7e-12 75.1 198 32.3
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.0e-11 74.7 201 35.8
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 1.3e-11 74.3 215 31.6
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 2.9e-11 73.2 217 30.0
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 4.2e-10 69.3 160 32.5
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.5e-10 68.9 118 39.0
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 2.1e-09 67.0 138 38.4
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 3.9e-08 62.8 234 27.4
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.1e-08 62.4 187 31.0
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 8.8e-08 61.6 225 25.8
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.3e-07 59.7 151 31.1
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.8e-06 56.6 151 29.1
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 4.8e-06 55.8 151 29.8
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 6.3e-06 55.5 98 37.8


User provided reference genes

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