Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 6.0e-188 660.6 316 100.0
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.8e-160 569.3 317 83.3
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.4e-160 568.9 317 83.9
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 2.2e-158 562.4 317 83.3
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 3.2e-157 558.5 317 82.6
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.6e-156 556.2 317 81.4
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 4.7e-156 554.7 317 82.3
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 6.1e-156 554.3 317 82.3
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 7.9e-156 553.9 313 82.7
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 7.9e-156 553.9 339 78.5
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.4e-155 553.1 317 82.3
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.8e-155 552.7 320 81.9
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 8.8e-155 550.4 316 81.6
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.3e-153 546.6 316 82.0
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 2.8e-153 545.4 319 81.5
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 3.7e-153 545.0 316 81.6
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 8.2e-153 543.9 318 79.9
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 4.1e-152 541.6 317 79.2
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 2.6e-151 538.9 323 78.9
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 5.9e-151 537.7 318 78.9
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 7.7e-151 537.3 315 78.4
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.0e-150 537.0 317 77.9
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.7e-150 536.2 318 79.2
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 1.7e-150 536.2 323 77.4
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 2.9e-150 535.4 316 79.7
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 8.5e-150 533.9 315 79.4
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.4e-149 533.1 319 77.4
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.2e-149 531.9 315 78.7
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 4.2e-149 531.6 371 70.9
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.1e-148 529.3 314 77.7
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 3.6e-148 528.5 319 76.8
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 4.7e-148 528.1 315 77.1
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 6.1e-148 527.7 303 82.5
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 8.0e-148 527.3 316 77.2
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-147 526.2 319 76.5
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 3.0e-147 525.4 315 75.9
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 3.9e-147 525.0 322 77.6
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.1e-146 523.5 316 77.2
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 2.6e-146 522.3 315 77.1
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 4.4e-146 521.5 315 76.8
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 9.7e-146 520.4 319 76.8
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.7e-145 519.6 315 76.2
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 8.2e-145 517.3 316 75.0
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.8e-144 516.2 319 77.1
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 2.4e-144 515.8 316 74.7
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 4.1e-144 515.0 320 75.3
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 9.1e-144 513.8 314 75.8
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 9.1e-144 513.8 316 73.4
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 2.0e-143 512.7 316 73.1
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.6e-143 512.3 317 74.8
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.0e-142 510.4 315 74.3
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 3.8e-142 508.4 314 72.9
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.0e-142 508.1 314 72.9
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.1e-141 506.9 314 72.9
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.9e-141 506.1 317 73.2
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 2.5e-141 505.8 316 73.4
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 5.5e-141 504.6 316 75.3
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.6e-140 503.1 319 74.9
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.1e-140 502.7 317 75.4
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 3.6e-140 501.9 316 74.4
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 4.7e-140 501.5 315 75.9
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.0e-139 500.4 331 71.3
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-139 499.6 315 72.1
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.8e-139 499.6 315 72.1
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 74.1
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 4.0e-139 498.4 319 72.1
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 5.2e-139 498.0 317 74.1
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.8e-139 497.3 314 73.9
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.2e-138 496.9 315 74.6
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 2.0e-138 496.1 315 74.3
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 2.6e-138 495.7 315 73.7
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 9.7e-138 493.8 315 74.6
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 9.7e-138 493.8 314 73.2
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.3e-137 493.4 314 71.7
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 2.2e-137 492.7 315 74.6
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 2.8e-137 492.3 315 74.3
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 2.8e-137 492.3 315 74.3
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 4.8e-137 491.5 315 74.6
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 4.8e-137 491.5 315 73.7
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 6.3e-137 491.1 315 74.0
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 6.3e-137 491.1 367 64.6
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 8.3e-137 490.7 315 72.7
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.4e-136 490.0 315 70.8
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.8e-136 489.6 316 74.4
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.4e-136 489.2 316 72.2
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 5.3e-136 488.0 315 73.3
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.2e-135 486.9 315 72.7
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 1.6e-135 486.5 315 73.0
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.5e-135 485.0 316 71.8
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 7.7e-135 484.2 315 72.4
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 7.7e-135 484.2 316 71.5
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.0e-134 483.8 306 72.2
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.0e-134 483.8 320 70.9
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 2.2e-134 482.6 315 72.7
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.2e-134 482.6 315 72.4
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.2e-134 482.6 322 68.9
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 5.0e-134 481.5 317 71.0
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 5.0e-134 481.5 317 70.3
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 6.5e-134 481.1 318 70.4
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.1e-133 480.3 317 72.9
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.5e-133 479.9 317 72.2
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.9e-133 479.6 314 70.1
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 2.5e-133 479.2 314 71.3
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.5e-133 479.2 313 71.9
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.0e-132 474.2 316 69.9
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.0e-131 471.9 317 69.1
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 8.8e-131 470.7 317 70.0
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.3e-129 466.8 292 71.2
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 3.7e-129 465.3 317 68.5
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 3.7e-129 465.3 319 69.0
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.4e-128 462.6 314 68.2
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 4.1e-128 461.8 406 58.6
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.4e-128 461.5 314 69.7
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 3.8e-126 455.3 335 64.2
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.0e-126 454.9 314 66.9
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 8.6e-126 454.1 389 58.1
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.6e-124 449.9 316 67.7
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.6e-124 448.7 318 68.2
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 8.9e-123 444.1 320 65.6
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.7e-121 438.7 315 66.3
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 4.1e-120 435.3 289 72.7
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.6e-119 433.3 317 67.2
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 2.7e-119 432.6 324 63.3
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 5.9e-119 431.4 267 74.2
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 9.8e-114 414.1 284 70.4
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 4.1e-112 408.7 337 59.1
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 7.0e-112 407.9 289 66.8
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 2.7e-111 406.0 333 58.9
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 5.0e-110 401.7 321 63.2
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 8.0e-108 394.4 304 65.1
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.4e-107 393.7 316 60.4
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.4e-104 383.6 316 57.3
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.9e-104 383.3 317 57.7
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 7.1e-104 381.3 321 56.1
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 9.2e-104 380.9 316 56.3
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.9e-101 373.2 291 61.9
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 7.6e-98 361.3 243 68.7
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.7e-95 352.8 225 74.2
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 4.2e-88 328.9 199 77.9
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 3.5e-87 325.9 353 45.6
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 6.0e-87 325.1 185 83.8
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.0e-78 296.2 180 76.7
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 9.6e-77 291.2 218 62.8
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.5e-69 267.3 304 50.0
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 1.5e-66 257.3 185 69.7
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 2.6e-66 256.5 151 80.1
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 8.7e-62 241.5 165 70.9
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 4.3e-61 239.2 144 75.7
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 8.2e-52 208.4 140 68.6
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.5e-45 187.6 146 59.6
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 9.1e-43 178.3 131 65.6
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 2.7e-39 166.8 100 77.0
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.1e-35 154.8 124 60.5
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 5.3e-35 152.5 111 63.1
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 3.5e-34 149.8 92 75.0
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 2.5e-32 143.7 93 72.0
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.0e-30 138.3 69 89.9
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 3.7e-28 129.8 101 65.3
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.4e-27 127.9 75 73.3
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 5.3e-27 125.9 86 69.8
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 2.6e-26 123.6 67 79.1
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 7.2e-24 115.5 73 69.9
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 4.7e-23 112.8 165 40.6
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 3.5e-18 96.7 58 70.7
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.9e-16 90.9 72 61.1
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.4e-13 80.1 68 61.8
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 5.7e-13 79.3 43 81.4
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 5.9e-10 69.3 56 62.5
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 3.8e-09 66.6 84 44.0
PGR102G2199 Punica granatum HOM05D004085 ORTHO05D000487 6.8e-06 55.8 54 51.9


User provided reference genes

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