Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1481.8 842 100.0
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1196.0 839 76.8
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1194.1 831 77.7
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1188.7 832 77.2
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1188.3 831 77.4
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1188.3 840 76.4
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1186.8 831 77.3
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1186.8 831 77.0
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1185.2 831 77.0
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1182.9 832 80.3
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1182.5 831 76.9
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1178.3 832 76.3
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1174.1 864 75.6
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1173.7 836 76.8
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1172.1 832 75.8
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1170.2 834 79.4
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1166.4 840 77.1
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1166.0 839 79.4
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1165.6 849 75.6
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1163.3 828 76.1
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1162.9 842 74.8
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1162.5 832 79.0
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1160.6 826 76.8
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1157.5 789 77.4
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1156.4 840 73.8
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1152.9 830 77.6
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1152.1 839 78.5
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1152.1 840 76.1
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1141.7 824 75.6
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 838 79.7
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1139.0 862 73.3
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1139.0 832 78.4
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1138.3 873 77.1
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1136.7 839 73.8
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 854 73.1
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1134.8 848 74.4
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1129.4 841 76.1
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1129.0 845 76.9
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1127.5 840 74.9
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1127.1 842 74.5
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1125.2 842 74.5
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1124.4 842 74.3
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1122.5 846 74.8
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1121.7 850 71.1
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1118.2 845 71.1
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1114.8 839 72.7
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1114.4 848 70.2
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1110.5 848 70.0
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1110.1 847 71.0
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1107.0 948 67.3
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1106.3 817 73.8
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 848 69.7
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1101.3 832 72.2
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1082.4 793 73.0
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1080.9 842 72.0
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1080.9 842 70.3
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1078.2 839 68.8
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1075.5 827 71.3
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 5.8e-312 1074.3 836 70.3
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 5.8e-312 1073.5 834 71.6
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 1.7e-311 1072.4 841 69.1
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 2.3e-311 1072.0 839 70.7
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 4.0e-311 1071.2 828 70.4
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.0e-311 1071.2 847 71.2
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 1.5e-310 1069.3 837 70.7
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 2.0e-310 1068.9 836 69.9
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 9.7e-310 1066.6 836 69.1
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.3e-309 1066.2 843 71.2
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 2.8e-309 1065.1 838 69.5
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 3.7e-309 1064.7 825 69.7
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 4.8e-309 1064.3 864 66.7
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 8.2e-309 1063.5 829 70.4
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 1.1e-308 1063.1 822 70.0
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 1.4e-308 1062.8 833 70.0
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 2.4e-308 1062.0 864 66.6
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 3.1e-308 1061.6 835 70.3
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 3.1e-308 1061.6 817 67.8
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 1.5e-307 1059.3 821 69.7
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 7.7e-307 1057.0 831 71.8
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 1.0e-306 1056.6 854 68.0
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 1.3e-306 1056.2 840 69.4
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 3.8e-306 1054.7 828 68.6
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 1.0e-303 1046.6 892 65.0
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 1.1e-302 1043.1 815 68.8
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 1.1e-300 1036.6 815 68.6
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 2.4e-300 1035.4 815 68.5
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 5.3e-300 1034.2 838 67.1
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 1.2e-299 1033.1 666 78.1
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 8.5e-298 1026.9 822 68.1
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 5.5e-297 1024.2 836 66.4
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 5.2e-295 1017.7 835 67.7
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 4.5e-291 1004.6 905 61.8
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 1.7e-290 1002.7 733 70.8
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 4.1e-284 981.5 647 77.0
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.0e-283 979.2 647 76.8
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 2.7e-283 978.8 663 74.8
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 6.6e-282 974.2 833 63.5
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 8.6e-282 973.8 929 63.8
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 1.2e-280 969.9 829 64.8
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 5.4e-276 954.5 818 62.3
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 2.8e-272 942.2 623 76.7
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 4.4e-270 934.9 775 67.6
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 2.2e-269 932.6 827 60.9
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 3.9e-266 921.8 839 62.5
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 1.2e-264 916.8 639 74.5
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.2e-264 916.8 828 65.3
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 4.0e-263 911.8 571 80.6
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.7e-258 896.3 798 58.4
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 4.6e-243 845.1 846 54.0
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 8.7e-242 840.9 830 54.9
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 5.5e-228 795.0 789 53.5
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.0e-222 776.5 850 56.8
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 2.5e-217 759.6 798 51.1
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 1.3e-210 737.3 840 54.9
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 6.9e-199 698.4 427 83.1
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.2e-163 581.3 479 66.4
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.3e-156 556.6 443 68.4
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 2.5e-140 503.8 319 81.2
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.8e-123 446.4 307 71.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.1e-122 443.7 268 82.1
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.3e-117 427.6 794 36.1
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 3.9e-117 426.8 778 36.0
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 1.6e-107 394.8 373 67.6
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.9e-101 373.6 379 55.7
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 8.7e-93 345.9 855 30.3
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.3e-68 264.2 280 57.9
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.2e-64 251.5 395 48.6
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 2.8e-51 208.0 203 62.1
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.2e-49 202.6 180 59.4
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 5.0e-48 197.2 130 76.2
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 1.1e-42 179.5 127 75.6
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.8e-42 178.7 142 70.4
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.1e-34 152.9 178 47.2
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.4e-34 152.5 178 47.2
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.7e-32 145.6 158 55.1
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 3.9e-32 144.4 121 66.1
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 1.3e-16 92.8 78 61.5
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.2e-11 75.5 78 52.6
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 4.8e-06 57.8 67 49.3


User provided reference genes

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