Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 3.8e-154 548.1 278 100.0
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 4.2e-153 544.7 278 99.3
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 4.8e-96 355.1 278 65.1
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 1.4e-95 353.6 278 66.2
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 6.0e-91 338.2 278 65.8
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.8e-90 336.7 234 70.5
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 2.3e-90 336.3 236 69.1
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 5.1e-90 335.1 278 63.3
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.5e-89 333.6 235 69.8
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 9.6e-89 330.9 274 64.2
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 1.6e-88 330.1 279 62.7
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 4.8e-88 328.6 271 65.3
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 6.2e-88 328.2 279 61.3
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.1e-87 327.4 278 63.7
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.4e-87 327.0 245 68.2
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.8e-87 326.6 240 68.8
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.9e-87 324.7 278 61.5
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.9e-87 324.7 247 66.0
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 6.9e-87 324.7 278 61.5
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 6.9e-87 324.7 242 68.2
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.5e-86 323.6 278 61.9
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.5e-86 323.6 258 63.6
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 2.6e-86 322.8 277 63.2
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 3.4e-86 322.4 274 63.1
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 5.8e-86 321.6 280 60.0
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 7.6e-86 321.2 281 61.9
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 9.9e-86 320.9 278 60.1
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.3e-85 320.5 236 67.8
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.3e-85 320.5 244 64.8
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 3.8e-85 318.9 269 60.6
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 4.9e-85 318.5 236 65.3
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 4.9e-85 318.5 233 67.8
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 4.9e-85 318.5 272 60.7
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 6.4e-85 318.2 233 69.5
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 6.4e-85 318.2 281 58.7
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.4e-84 317.0 236 66.9
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.9e-84 316.6 235 66.8
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 2.5e-84 316.2 245 65.7
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 4.2e-84 315.5 233 69.1
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-83 313.2 278 59.7
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 4.6e-83 312.0 233 64.8
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 6.0e-83 311.6 237 63.7
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 7.9e-83 311.2 278 59.4
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 5.1e-82 308.5 283 57.2
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 6.7e-82 308.1 271 59.0
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 8.7e-82 307.8 277 58.5
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.5e-81 307.0 280 59.3
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.9e-81 306.6 281 57.7
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 5.6e-81 305.1 232 66.4
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 7.4e-81 304.7 233 64.4
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 7.4e-81 304.7 232 66.4
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.3e-80 303.9 258 59.3
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.8e-80 302.8 247 62.8
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.8e-80 302.8 245 60.8
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 4.8e-80 302.0 280 57.5
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 8.2e-80 301.2 276 56.5
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 1.1e-79 300.8 240 63.3
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 6.9e-79 298.1 236 62.3
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 9.0e-79 297.7 271 56.8
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.6e-78 296.2 236 61.9
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.7e-77 293.5 239 59.4
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 4.2e-76 288.9 271 53.5
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 7.1e-76 288.1 280 56.4
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 9.3e-76 287.7 236 61.0
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 6.0e-75 285.0 278 54.0
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 1.3e-74 283.9 207 66.2
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.8e-74 283.5 277 53.4
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 6.7e-74 281.6 265 54.7
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 1.9e-73 280.0 229 63.8
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 3.3e-73 279.3 236 58.5
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.3e-73 279.3 210 66.2
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 5.7e-73 278.5 269 54.3
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 5.7e-73 278.5 236 58.1
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 5.7e-73 278.5 236 58.1
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.6e-72 276.9 236 58.9
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.6e-72 276.9 236 58.9
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 3.7e-72 275.8 236 58.1
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 6.3e-72 275.0 271 56.1
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 8.2e-72 274.6 236 58.1
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.8e-71 273.5 269 52.8
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.8e-71 273.5 236 56.8
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 6.9e-71 271.6 249 58.2
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 2.6e-70 269.6 200 68.0
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.6e-70 269.6 246 54.9
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 5.9e-70 268.5 200 66.5
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 2.7e-67 259.6 268 51.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 3.9e-66 255.8 230 53.9
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 5.1e-66 255.4 237 53.6
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.0e-65 253.4 243 53.9
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.5e-65 253.1 248 54.4
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.8e-64 249.6 190 65.8
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 2.8e-64 249.6 249 54.2
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 6.3e-64 248.4 189 65.6
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 6.3e-64 248.4 185 65.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.1e-63 247.7 199 59.8
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 2.6e-62 243.0 223 57.4
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 7.7e-62 241.5 257 49.8
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.2e-60 235.0 190 62.6
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.4e-57 225.7 184 62.5
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.7e-56 223.8 240 50.4
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 6.5e-53 211.8 161 67.1
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-50 203.8 199 56.8
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 7.4e-49 198.4 124 75.0
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.5e-45 185.3 217 52.5
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 2.7e-43 179.9 122 72.1
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 5.9e-38 162.2 139 56.8
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-33 146.7 150 53.3
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 2.6e-33 146.7 216 35.2
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-29 134.4 249 39.8
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.7e-29 134.0 120 59.2
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.2e-27 127.9 128 56.2
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.0e-27 125.2 119 57.1
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 6.8e-26 122.1 156 44.9
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.1e-23 114.8 80 68.8
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.6e-21 105.1 74 66.2
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-20 104.0 71 71.8
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.5e-20 101.7 106 50.9
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.8e-18 97.4 80 62.5
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 6.8e-18 95.5 89 56.2
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-17 94.4 129 44.2
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 3.4e-17 93.2 82 51.2
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.3e-16 88.6 122 43.4
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.6e-14 84.3 79 57.0
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.3e-13 81.3 101 46.5
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.3e-13 81.3 91 40.7
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 6.6e-13 79.0 66 53.0
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.6e-12 75.9 102 43.1
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-11 73.6 57 63.2
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-09 67.8 90 42.2
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 9.8e-09 65.1 141 31.2
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-08 63.9 148 31.8
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 6.4e-08 62.4 47 53.2
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 6.4e-08 62.4 47 53.2
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 5.4e-07 59.3 64 43.8
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 5.4e-07 59.3 64 43.8
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.2e-07 58.5 58 55.2
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 9.2e-07 58.5 52 61.5


User provided reference genes

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