Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2990 Cannabis sativa HOM05D006335 ORTHO05D007617 2.0e-107 392.5 207 100.0
MD09G1238400 Malus domestica HOM05D006335 ORTHO05D007617 9.5e-25 117.9 126 52.4
FvH4_6g27231 Fragaria vesca HOM05D006335 ORTHO05D007617 2.3e-23 113.2 101 55.4
Prupe.3G117900 Prunus persica HOM05D006335 ORTHO05D007617 2.0e-22 110.2 99 58.6
RcHm_v2.0_Chr2g0129361 Rosa chinensis HOM05D006335 ORTHO05D007617 2.6e-22 109.8 144 44.4
RcHm_v2.0_Chr2g0129291 Rosa chinensis HOM05D006335 ORTHO05D007617 3.4e-22 109.4 121 52.1
QL08p041551 Quercus lobata HOM05D006335 ORTHO05D007617 4.4e-22 109.0 113 54.9
Hma1.2p1_0178F.1_g078870 Hydrangea macrophylla HOM05D006335 ORTHO05D007617 5.8e-22 108.6 119 47.1
Actinidia04365 Actinidia chinensis HOM05D006335 ORTHO05D007617 1.4e-20 104.0 141 39.0
MD08G1181200 Malus domestica HOM05D006335 ORTHO05D007617 2.4e-20 103.2 98 54.1
CiPaw.04G132900 Carya illinoinensis HOM05D006335 ORTHO05D007617 1.0e-18 97.8 165 38.8
Carub.0001s0568 Capsella rubella HOM05D006335 ORTHO05D007617 1.7e-18 97.1 109 48.6
FAN09G0462 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.3e-18 96.7 99 50.5
FvH4_6g27220 Fragaria vesca HOM05D006335 ORTHO05D007617 3.0e-18 96.3 99 51.5
FAN14G0983 Fragaria x ananassa HOM05D006335 ORTHO05D007617 3.0e-18 96.3 99 51.5
Manes.01G133300 Manihot esculenta HOM05D006335 ORTHO05D007617 3.9e-18 95.9 169 37.3
Ca_18884_v3 Cicer arietinum L. HOM05D006335 ORTHO05D007617 5.1e-18 95.5 95 48.4
Medtr4g079460 Medicago truncatula HOM05D006335 ORTHO05D007617 5.1e-18 95.5 101 44.6
Phvul.011G133700 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 6.6e-18 95.1 115 42.6
Psat7g165440 Pisum sativum HOM05D006335 ORTHO05D007617 6.6e-18 95.1 137 39.4
Phvul.011G133000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 8.6e-18 94.7 115 42.6
Psat7g165600 Pisum sativum HOM05D006335 ORTHO05D007617 8.6e-18 94.7 137 38.7
TWI59G1087 Tripterygium wilfordii HOM05D006335 ORTHO05D007617 1.1e-17 94.4 103 48.5
TAR626G0568 Trochodendron aralioides HOM05D006335 ORTHO05D007617 1.1e-17 94.4 105 48.6
Cc05_g08270 Coffea canephora HOM05D006335 ORTHO05D007617 1.5e-17 94.0 111 43.2
Eucgr.K01124 Eucalyptus grandis HOM05D006335 ORTHO05D007617 1.5e-17 94.0 101 46.5
FAN05G4039 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.5e-17 94.0 99 49.5
Medtr4g079810 Medicago truncatula HOM05D006335 ORTHO05D007617 1.5e-17 94.0 95 47.4
TPR.G28309 Trifolium pratense HOM05D006335 ORTHO05D007617 1.5e-17 94.0 95 48.4
VMungo1127G1825 Vigna mungo HOM05D006335 ORTHO05D007617 1.9e-17 93.6 115 41.7
Lj3g0002577 Lotus japonicus HOM05D006335 ORTHO05D007617 2.5e-17 93.2 109 45.0
arahy.Tifrunner.gnm1.ann1.E7WT9K Arachis hypogaea HOM05D006335 ORTHO05D007617 4.3e-17 92.4 152 36.8
arahy.Tifrunner.gnm1.ann1.Y7YMH3 Arachis hypogaea HOM05D006335 ORTHO05D007617 4.3e-17 92.4 99 45.5
Lj1A685T55 Lonicera japonica HOM05D006335 ORTHO05D007617 9.5e-17 91.3 122 41.8
Sed0026533 Sechium edule HOM05D006335 ORTHO05D007617 9.5e-17 91.3 105 50.5
Glyma.15G020200 Glycine max HOM05D006335 ORTHO05D007617 1.2e-16 90.9 98 43.9
Phvul.011G131000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 1.2e-16 90.9 115 42.6
Lalb_Chr01g0005971 Lupinus albus HOM05D006335 ORTHO05D007617 1.6e-16 90.5 156 37.8
RcHm_v2.0_Chr2g0129301 Rosa chinensis HOM05D006335 ORTHO05D007617 1.6e-16 90.5 137 40.9
AL1G16330 Arabidopsis lyrata HOM05D006335 ORTHO05D007617 2.8e-16 89.7 101 45.5
arahy.Tifrunner.gnm1.ann1.IJ2KIS Arachis hypogaea HOM05D006335 ORTHO05D007617 3.6e-16 89.4 151 35.8
SHI18965 Sapria himalayana HOM05D006335 ORTHO05D007617 3.6e-16 89.4 113 41.6
Glyma.06G277900 Glycine max HOM05D006335 ORTHO05D007617 6.2e-16 88.6 98 42.9
Thhalv10009758m.g Eutrema salsugineum HOM05D006335 ORTHO05D007617 8.1e-16 88.2 104 43.3
Cpa.g.sc209.36 Carica papaya HOM05D006335 ORTHO05D007617 1.1e-15 87.8 124 42.7
CARHR005880 Cardamine hirsuta HOM05D006335 ORTHO05D007617 4.0e-15 85.9 111 41.4
Sc05g0006750 Simmondsia chinensis HOM05D006335 ORTHO05D007617 6.8e-15 85.1 112 46.4
Prupe.3G121400 Prunus persica HOM05D006335 ORTHO05D007617 1.2e-14 84.3 175 36.0
Glyma.06G279000 Glycine max HOM05D006335 ORTHO05D007617 1.5e-14 84.0 98 40.8
Sp1g05110 Schrenkiella parvula HOM05D006335 ORTHO05D007617 1.5e-14 84.0 105 40.0
THA.LOC104816084 Tarenaya hassleriana HOM05D006335 ORTHO05D007617 1.5e-14 84.0 100 48.0
GSVIVG01034999001 Vitis vinifera HOM05D006335 ORTHO05D007617 1.5e-14 84.0 103 43.7
Solyc12g010850.1 Solanum lycopersicum HOM05D006335 ORTHO05D007617 2.0e-14 83.6 110 42.7
Duzib147G1311 Durio zibethinus HOM05D006335 ORTHO05D007617 2.6e-14 83.2 103 45.6
Sopen12g006210 Solanum pennellii HOM05D006335 ORTHO05D007617 2.6e-14 83.2 110 42.7
A08p36030 Brassica napus HOM05D006335 ORTHO05D007617 3.4e-14 82.8 112 42.0
BraA08t35509Z Brassica rapa HOM05D006335 ORTHO05D007617 3.4e-14 82.8 112 42.0
AT1G06320 Arabidopsis thaliana HOM05D006335 ORTHO05D007617 4.4e-14 82.4 101 40.6
TAR624G0615 Trochodendron aralioides HOM05D006335 ORTHO05D007617 4.4e-14 82.4 114 46.5
VMungo1127G1181 Vigna mungo HOM05D006335 ORTHO05D007617 4.4e-14 82.4 128 35.9
BcaC07g36801 Brassica carinata HOM05D006335 ORTHO05D007617 5.8e-14 82.0 110 41.8
FAN14G0259 Fragaria x ananassa HOM05D006335 ORTHO05D007617 5.8e-14 82.0 72 56.9
Gorai.006G001500 Gossypium raimondii HOM05D006335 ORTHO05D007617 5.8e-14 82.0 101 48.5
BolC8t47040H Brassica oleracea HOM05D006335 ORTHO05D007617 7.6e-14 81.6 112 41.1
C08p02480 Brassica napus HOM05D006335 ORTHO05D007617 1.3e-13 80.9 110 40.9
Gohir.D09G001300 Gossypium hirsutum HOM05D006335 ORTHO05D007617 1.3e-13 80.9 101 47.5
Thecc.01G149900 Theobroma cacao HOM05D006335 ORTHO05D007617 1.3e-13 80.9 101 44.6
BcaB03g13422 Brassica carinata HOM05D006335 ORTHO05D007617 1.7e-13 80.5 100 44.0
BcaC07g42074 Brassica carinata HOM05D006335 ORTHO05D007617 2.2e-13 80.1 102 42.2
Nn4g25571 Nelumbo nucifera HOM05D006335 ORTHO05D007617 2.9e-13 79.7 104 39.4
C08p51300 Brassica napus HOM05D006335 ORTHO05D007617 4.9e-13 79.0 100 42.0
BolC8t52656H Brassica oleracea HOM05D006335 ORTHO05D007617 4.9e-13 79.0 100 42.0
PGR142G3040 Punica granatum HOM05D006335 ORTHO05D007617 8.4e-13 78.2 98 42.9
COL.COLO4_33572 Corchorus olitorius HOM05D006335 ORTHO05D007617 1.1e-12 77.8 102 44.1
Nitab4.5_0000537g0060 Nicotiana tabacum HOM05D006335 ORTHO05D007617 2.4e-12 76.6 108 38.9
Dinv15448 Davidia involucrata HOM05D006335 ORTHO05D007617 3.2e-12 76.3 108 40.7
Gohir.A09G001600 Gossypium hirsutum HOM05D006335 ORTHO05D007617 4.2e-12 75.9 101 46.5
Aqoxy2G02728 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 5.4e-12 75.5 106 37.7
Dinv15181 Davidia involucrata HOM05D006335 ORTHO05D007617 5.4e-12 75.5 104 41.3
Nitab4.5_0008326g0020 Nicotiana tabacum HOM05D006335 ORTHO05D007617 5.4e-12 75.5 102 41.2
Potri.005G202500 Populus trichocarpa HOM05D006335 ORTHO05D007617 5.4e-12 75.5 103 40.8
TAR633G2592 Trochodendron aralioides HOM05D006335 ORTHO05D007617 5.4e-12 75.5 101 41.6
Aa31LG1G7320 Aethionema arabicum HOM05D006335 ORTHO05D007617 7.1e-12 75.1 112 37.5
FAN05G3171 Fragaria x ananassa HOM05D006335 ORTHO05D007617 7.1e-12 75.1 161 34.2
A09p67040 Brassica napus HOM05D006335 ORTHO05D007617 9.2e-12 74.7 100 41.0
BraA09t42038Z Brassica rapa HOM05D006335 ORTHO05D007617 9.2e-12 74.7 100 41.0
Zm00001eb014790 Zea mays HOM05D006335 ORTHO05D007617 1.2e-11 74.3 104 35.6
Sabra05G0153900 Salix brachista HOM05D006335 ORTHO05D007617 2.1e-11 73.6 102 35.3
Os03g0308600 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 3.5e-11 72.8 122 32.8
PSO210G6959 Papaver somniferum HOM05D042607 ORTHO05D007617 1.1e-09 67.8 96 41.7
AUR62038933 Chenopodium quinoa HOM05D006335 ORTHO05D007617 2.5e-09 66.6 118 36.4
FAN21G0105 Fragaria x ananassa HOM05D006335 ORTHO05D007617 4.3e-09 65.9 104 41.3
arahy.Tifrunner.gnm1.ann1.DF2I7I Arachis hypogaea HOM05D006335 ORTHO05D007617 5.6e-09 65.5 99 36.4
Migut.D02221 Erythranthe guttata HOM05D006335 ORTHO05D007617 7.3e-09 65.1 120 35.8
AUR62039006 Chenopodium quinoa HOM05D006335 ORTHO05D007617 9.6e-09 64.7 118 35.6
Haze_13357 Corylus avellana HOM05D006335 ORTHO05D007617 9.6e-09 64.7 68 52.9
Lsat_1_v5_gn_8_120600 Lactuca sativa HOM05D006335 ORTHO05D007617 9.6e-09 64.7 99 39.4
Thecc.04G299900 Theobroma cacao HOM05D006335 ORTHO05D007617 9.6e-09 64.7 183 29.0
vmacro14418 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 1.2e-08 64.3 72 43.1
Ciclev10016971m.g Citrus clementina HOM05D006335 ORTHO05D007617 2.1e-08 63.5 70 45.7
Aqoxy1G02076 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 8.1e-08 61.6 95 37.9
Hund07816 Selenicereus undatus HOM05D006335 ORTHO05D007617 1.8e-07 60.5 198 28.8
PGSC0003DMG400007858 Solanum tuberosum HOM05D006335 ORTHO05D007617 3.1e-07 59.7 110 35.5
Hund03123 Selenicereus undatus HOM05D006335 ORTHO05D007617 2.0e-06 57.0 101 35.6
PSO170G4547 Papaver somniferum HOM05D006335 ORTHO05D007617 2.6e-06 56.6 98 33.7
COL.COLO4_34622 Corchorus olitorius HOM05D006335 ORTHO05D007617 4.4e-06 55.8 73 42.5
FAN16G3721 Fragaria x ananassa HOM05D022579 ORTHO05D007617 9.9e-06 54.7 41 58.5
HanXRQChr16g0530371 Helianthus annuus HOM05D006335 ORTHO05D007617 9.9e-06 54.7 78 39.7


User provided reference genes

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