Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 4247.2 2233 100.0
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 3013.8 2243 71.6
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 3005.3 2233 71.9
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2983.7 2256 71.1
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2951.4 2249 70.7
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2928.7 2244 70.0
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2855.1 2313 67.1
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2849.3 2145 69.8
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2835.8 2152 69.7
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2833.1 2266 67.3
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2819.3 2221 68.7
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2812.3 2225 67.9
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2793.1 2161 68.9
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2791.5 2181 68.0
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2788.8 2159 69.6
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2783.1 2238 67.1
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2773.8 2179 67.8
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2773.8 2161 68.4
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2769.6 2207 67.2
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2751.1 2123 68.7
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2715.3 1892 74.3
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2691.0 2175 65.8
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2686.8 2230 64.8
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2682.9 2247 64.9
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2672.1 2196 66.3
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2655.2 2156 66.5
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2642.1 2140 66.2
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2635.5 2104 66.1
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2632.1 2191 64.4
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2619.7 2133 65.7
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2598.9 2127 65.4
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2595.8 2129 65.0
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2585.4 2127 65.1
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2568.5 2136 64.7
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2546.5 2001 66.9
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2541.5 2251 60.8
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2530.7 2060 65.6
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2522.3 2041 65.8
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2507.6 2234 61.5
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2503.4 2163 62.2
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2502.2 2061 64.6
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2502.2 2061 64.6
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2497.6 2416 58.7
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2493.0 2051 65.7
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2467.6 2276 59.7
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2467.2 2193 61.1
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2461.0 2169 61.3
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2458.7 2078 62.9
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2458.7 2136 63.4
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2452.9 2268 59.3
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2451.0 2254 59.2
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2445.2 2206 60.1
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2443.7 2231 59.5
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2442.5 2232 59.6
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2442.2 2221 60.2
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2441.8 2245 59.5
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2440.6 2214 59.8
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2440.2 1634 76.4
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2436.4 2215 59.8
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2432.5 2255 59.0
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2381.7 2178 59.8
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2374.4 2068 61.8
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2360.5 2221 59.0
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2347.0 1966 63.7
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2341.6 2118 60.0
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2332.8 1454 81.3
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2326.2 2263 57.4
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2309.6 2175 58.4
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 2281.5 3092 46.6
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 2220.7 2142 58.1
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 2191.4 1857 62.6
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 2159.8 2262 54.8
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2129.8 2094 56.8
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1966.0 1997 54.1
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1929.8 2172 50.8
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1907.1 1760 59.7
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1880.1 1776 58.8
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1804.6 1621 60.0
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1778.5 1129 80.2
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1741.1 1998 49.9
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1726.1 1662 56.8
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1592.8 1999 45.7
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1502.6 2133 42.4
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1439.5 1361 57.3
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1364.4 1991 41.6
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1305.0 2010 40.9
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1292.3 1515 47.7
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1273.1 918 70.5
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1253.4 2099 37.4
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1232.2 2162 38.3
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 1220.3 1416 51.3
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1172.1 1030 59.9
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 0.0e+00 1127.1 850 68.7
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 9.8e-309 1064.7 1050 56.7
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 8.6e-297 1025.0 830 63.4
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 3.7e-255 886.7 1255 44.1
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 3.4e-253 880.2 1012 50.5
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 7.9e-234 815.8 927 50.5
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 6.9e-222 776.2 810 52.3
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 1.2e-213 748.8 726 57.0
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 9.4e-211 739.2 989 47.7
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 8.5e-204 716.1 578 65.1
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 8.5e-204 716.1 828 50.6
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.6e-194 685.3 442 80.5
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 3.5e-189 667.5 474 73.2
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 4.9e-175 620.5 386 81.9
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 3.3e-171 607.8 431 73.8
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 6.4e-167 593.6 375 80.5
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.3e-143 516.2 406 64.8
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 3.1e-129 468.4 811 38.7
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 7.1e-126 457.2 264 86.4
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 4.8e-114 417.9 288 74.7
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.1e-110 406.8 364 64.8
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.7e-103 382.9 878 31.8
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 4.2e-102 378.3 482 45.4
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 1.0e-95 357.1 287 70.0
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.2e-94 352.1 291 62.5
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 5.2e-92 344.7 1486 25.8
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.9e-78 299.7 314 56.4
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.0e-76 293.9 1779 23.6
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 3.0e-76 292.4 606 36.0
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 2.4e-73 282.7 422 47.2
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 6.6e-63 248.1 160 78.1
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 8.6e-63 247.7 148 83.1
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.6e-61 243.4 168 73.2
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.3e-55 223.8 432 42.4
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 2.3e-55 223.0 157 72.6
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 6.2e-53 214.9 180 67.8
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 6.2e-53 214.9 180 67.8
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 6.2e-53 214.9 180 67.8
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 6.2e-53 214.9 180 67.8
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 4.4e-51 208.8 126 85.7
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.8e-44 186.8 119 80.7
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 7.1e-41 174.9 129 72.9
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 7.1e-41 174.9 464 30.6
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 3.9e-39 169.1 151 60.3
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.1e-36 161.0 223 43.5
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 3.0e-31 142.9 151 53.0
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 5.3e-28 132.1 116 66.4
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 6.9e-28 131.7 326 32.8
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 6.4e-26 125.2 556 23.2
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 8.4e-26 124.8 248 39.5
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 1.1e-25 124.4 109 62.4
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.8e-23 117.1 69 87.0
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 1.9e-22 113.6 89 66.3
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 3.3e-22 112.8 75 74.7
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 7.4e-22 111.7 75 77.3
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 1.1e-20 107.8 607 24.5
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.4e-17 97.4 54 81.5
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 1.4e-17 97.4 151 43.7
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.5e-17 96.7 61 70.5
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 7.1e-17 95.1 70 71.4
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 9.3e-17 94.7 100 60.0
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 3.5e-16 92.8 95 54.7
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.3e-15 90.9 54 70.4
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.8e-15 90.5 53 83.0
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 3.9e-15 89.4 70 70.0
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.1e-15 89.0 61 70.5
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 1.1e-14 87.8 57 82.5
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 1.5e-14 87.4 54 85.2
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 1.9e-14 87.0 56 75.0
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 1.6e-13 84.0 51 82.4
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 3.1e-12 79.7 55 69.1
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.0e-12 79.3 53 71.7
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 4.0e-12 79.3 87 50.6
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 4.5e-11 75.9 65 63.1
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 7.6e-11 75.1 115 39.1
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.3e-10 74.3 68 54.4
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 8.4e-10 71.6 67 65.7
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 1.1e-09 71.2 46 69.6
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.2e-09 69.7 42 81.0
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 3.2e-09 69.7 286 26.2
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.6e-08 67.4 63 60.3
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 7.9e-08 65.1 49 73.5
CSS0032645 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-06 61.2 48 64.6
Lsat_1_v5_gn_8_96981 Lactuca sativa HOM05D001957 ORTHO05D004161 1.5e-06 60.8 43 69.8
COL.COLO4_16179 Corchorus olitorius HOM05D003845 ORTHO05D004161 9.7e-06 58.2 265 29.8
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 9.7e-06 58.2 41 73.2


User provided reference genes

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