Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 0.0e+00 1450.6 767 100.0
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.1e-254 883.6 783 63.7
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 9.3e-251 870.5 770 64.5
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 8.7e-249 864.0 731 64.8
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.3e-247 860.1 813 60.9
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 2.0e-245 852.8 814 60.1
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 4.9e-244 848.2 732 63.1
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 2.5e-243 845.9 733 62.6
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 2.7e-242 842.4 779 60.6
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.0e-233 813.9 778 59.9
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 9.7e-232 807.4 778 58.9
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.8e-230 803.1 778 58.0
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 4.1e-230 802.0 773 57.6
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 1.5e-229 800.0 782 58.4
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.2e-226 790.4 777 57.9
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 1.2e-226 790.4 666 64.4
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 8.8e-225 784.3 732 61.1
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.5e-224 783.5 784 58.3
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 3.3e-224 782.3 777 57.8
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 2.6e-221 772.7 785 58.3
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.2e-220 769.6 710 60.3
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 8.5e-220 767.7 676 63.2
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 2.5e-219 766.1 732 58.9
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 4.7e-218 761.9 604 67.7
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.4e-217 760.4 776 56.3
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 1.4e-217 760.4 723 59.1
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 2.3e-217 759.6 786 55.3
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 2.3e-217 759.6 780 56.3
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 3.9e-217 758.8 668 63.9
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 5.1e-217 758.4 786 55.3
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 8.8e-217 757.7 777 57.0
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 1.5e-216 756.9 713 58.2
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 9.7e-216 754.2 778 56.0
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 2.8e-215 752.7 735 59.5
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 6.3e-215 751.5 774 56.8
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 8.2e-215 751.1 784 57.3
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.4e-214 749.6 578 67.8
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 2.0e-213 746.5 725 59.0
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 8.5e-212 741.1 774 55.4
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 8.0e-210 734.6 711 58.2
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 4.0e-209 732.3 728 58.2
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 8.8e-209 731.1 781 55.1
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 8.8e-209 731.1 778 55.0
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 1.5e-208 730.3 774 55.3
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.2e-205 720.7 614 62.2
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 2.1e-202 709.9 720 54.9
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 2.7e-197 693.0 711 54.7
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 2.2e-196 689.9 778 51.7
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 1.1e-195 687.6 775 53.5
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.6e-194 683.7 764 53.9
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 4.0e-193 679.1 709 54.2
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 5.2e-193 678.7 760 53.9
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.5e-192 677.2 667 58.3
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 1.5e-192 677.2 784 53.2
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 4.4e-192 675.6 703 57.2
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 4.4e-192 675.6 711 54.1
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 5.7e-192 675.2 779 52.2
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.0e-188 664.5 657 57.2
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 2.3e-188 663.3 773 52.3
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.3e-188 663.3 732 53.3
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 5.0e-188 662.1 715 53.4
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 8.6e-188 661.4 786 51.0
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 5.6e-187 658.7 771 51.6
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 1.6e-186 657.1 779 52.1
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 8.0e-186 654.8 654 56.3
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.0e-185 654.4 737 52.1
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 1.4e-185 654.1 711 53.0
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 3.4e-184 649.4 719 52.2
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 5.7e-184 648.7 683 54.9
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 9.8e-184 647.9 734 52.9
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 2.2e-183 646.7 722 52.8
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 2.9e-183 646.4 785 49.9
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 4.9e-183 645.6 784 50.5
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 8.3e-183 644.8 642 55.0
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 8.3e-183 644.8 659 54.9
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.8e-182 643.7 783 52.0
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 2.0e-181 640.2 750 51.1
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 7.3e-179 631.7 721 51.7
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 8.9e-177 624.8 796 48.9
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 2.0e-176 623.6 671 52.9
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 7.0e-174 615.1 797 48.4
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 7.8e-173 611.7 831 47.2
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 3.0e-172 609.8 780 48.1
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 3.3e-171 606.3 776 47.9
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 8.1e-170 601.7 785 47.9
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 1.1e-169 601.3 758 48.3
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.6e-165 587.4 634 52.2
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.5e-163 580.9 486 61.3
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 4.4e-160 569.3 739 47.1
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 3.5e-157 559.7 708 47.0
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 1.1e-155 554.7 682 49.6
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 9.6e-147 525.0 491 57.4
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 4.6e-141 506.1 504 57.9
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 6.0e-141 505.8 421 63.4
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 4.6e-133 479.6 736 42.0
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.3e-132 478.0 555 50.1
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 6.7e-132 475.7 672 45.8
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 7.1e-126 455.7 465 54.2
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 8.7e-116 422.2 600 46.2
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 8.7e-116 422.2 738 39.6
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 3.3e-115 420.2 725 37.4
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 1.3e-106 391.7 745 35.3
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 4.8e-106 389.8 421 51.5
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.2e-101 375.2 480 48.3
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 7.5e-83 312.8 797 32.0
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 4.0e-76 290.4 386 47.4
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 3.5e-64 250.8 738 29.5
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 1.4e-60 238.8 446 39.2
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 5.0e-55 220.3 225 59.1
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.9e-54 218.4 325 44.6
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 8.9e-44 183.0 242 43.4
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 3.5e-40 171.0 205 48.3
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 7.1e-33 146.7 156 56.4
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.2e-32 146.0 195 49.7
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 2.3e-31 141.7 142 57.0
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 5.6e-30 137.1 621 23.2
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 2.6e-27 128.3 759 22.3
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.1e-24 118.6 125 52.0
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.8e-23 115.5 91 62.6
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-21 109.4 147 46.9
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 4.0e-20 104.4 100 61.0
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 7.1e-17 93.6 105 50.5
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 6.7e-15 87.0 97 48.5
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.1e-13 82.0 105 47.6
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 6.2e-13 80.5 168 30.4
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.7e-10 72.4 77 55.8
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.7e-10 72.4 101 45.5
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.5e-09 68.6 152 37.5
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 7.9e-08 63.5 146 30.1
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 2.3e-07 62.0 115 31.3
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 2.3e-07 62.0 154 28.6
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 3.0e-07 61.6 146 30.8
Cfa014606 Carpinus fangiana HOM05D000463 ORTHO05D001294 3.9e-07 61.2 103 32.0
Haze_13153 Corylus avellana HOM05D000463 ORTHO05D001294 3.9e-07 61.2 103 32.0
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 5.1e-07 60.8 87 35.6
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 6.7e-07 60.5 70 45.7
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 1.1e-06 59.7 122 29.5
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 3.3e-06 58.2 69 33.3
Lj3g0009712 Lotus japonicus HOM05D000463 ORTHO05D001294 3.3e-06 58.2 66 39.4
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 3.3e-06 58.2 121 29.8
MELO3C016706.2 Cucumis melo HOM05D000463 ORTHO05D001294 4.3e-06 57.8 96 31.2
CsaV3_4G033770 Cucumis sativus L. HOM05D000463 ORTHO05D001294 4.3e-06 57.8 96 31.2
MD11G1245000 Malus domestica HOM05D000463 ORTHO05D001294 4.3e-06 57.8 141 25.5
Actinidia12815 Actinidia chinensis HOM05D000463 ORTHO05D001294 9.7e-06 56.6 113 28.3
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 9.7e-06 56.6 66 39.4
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 9.7e-06 56.6 66 39.4
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 9.7e-06 56.6 66 39.4
CDE05G3599 Ceratophyllum demersum HOM05D000463 ORTHO05D001294 9.7e-06 56.6 63 39.7
Gohir.D04G143800 Gossypium hirsutum HOM05D000463 ORTHO05D001294 9.7e-06 56.6 64 40.6
Gorai.012G129300 Gossypium raimondii HOM05D000463 ORTHO05D001294 9.7e-06 56.6 64 40.6
HanXRQChr11g0346841 Helianthus annuus HOM05D000463 ORTHO05D001294 9.7e-06 56.6 74 39.2


User provided reference genes

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