Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.2e-138 496.5 247 100.0
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 6.3e-108 394.4 223 86.1
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 4.1e-107 391.7 223 86.1
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 2.6e-106 389.0 223 84.3
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 2.6e-106 389.0 223 83.9
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 3.5e-106 388.7 224 83.5
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 4.5e-106 388.3 223 85.2
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.7e-105 386.3 229 80.8
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.7e-105 386.3 224 82.6
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.0e-105 384.8 222 83.8
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 5.0e-105 384.8 223 83.9
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 8.5e-105 384.0 222 82.9
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 8.5e-105 384.0 223 83.0
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.5e-104 383.3 223 83.4
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.5e-104 383.3 223 83.4
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.9e-104 382.9 222 83.8
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.9e-104 382.9 223 83.9
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 3.2e-104 382.1 223 82.1
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 5.5e-104 381.3 223 83.4
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.6e-103 379.8 242 76.4
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 2.7e-103 379.0 223 83.0
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 6.1e-103 377.9 223 82.5
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 8.0e-103 377.5 223 81.6
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 8.0e-103 377.5 223 82.1
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 8.0e-103 377.5 223 83.4
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.0e-102 377.1 223 83.9
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.4e-102 376.7 223 84.3
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.8e-102 376.3 230 80.9
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.8e-102 376.3 223 82.5
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.8e-102 376.3 221 82.4
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.8e-102 376.3 223 82.5
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.3e-102 375.9 223 82.1
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 6.7e-102 374.4 223 82.1
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.7e-102 374.4 223 81.6
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 8.8e-102 374.0 227 80.6
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.1e-101 373.6 223 82.5
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.6e-101 372.5 223 83.0
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.6e-101 372.5 223 81.6
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 5.7e-101 371.3 223 81.2
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 9.7e-101 370.5 223 81.6
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.3e-100 370.2 240 78.3
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.2e-100 369.4 248 74.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 4.8e-100 368.2 223 78.9
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 4.8e-100 368.2 223 80.7
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 4.8e-100 368.2 223 82.1
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.8e-99 366.3 223 79.4
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 5.3e-99 364.8 223 78.9
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 9.1e-99 364.0 223 81.6
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 9.1e-99 364.0 223 78.9
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.0e-98 362.8 223 77.6
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 3.5e-98 362.1 225 80.9
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 5.9e-98 361.3 258 69.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 7.7e-98 360.9 242 73.6
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.0e-97 360.5 223 79.8
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.3e-97 360.1 223 80.3
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.7e-97 359.8 225 77.8
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.7e-97 359.8 218 82.1
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.2e-97 359.4 223 78.5
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 2.9e-97 359.0 223 79.8
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 3.8e-97 358.6 223 79.4
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 5.0e-97 358.2 225 81.3
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 5.0e-97 358.2 237 75.5
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 8.5e-97 357.5 222 79.3
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.1e-96 357.1 223 77.6
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.5e-96 356.7 223 77.6
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 2.5e-96 355.9 218 80.7
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 7.2e-96 354.4 218 80.3
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.2e-95 353.6 223 76.7
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.6e-95 353.2 219 78.1
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 2.1e-95 352.8 251 72.1
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.1e-95 352.8 223 76.7
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.1e-95 352.8 245 71.8
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 4.7e-95 351.7 218 79.8
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 4.7e-95 351.7 218 79.8
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 4.7e-95 351.7 218 78.9
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 6.1e-95 351.3 223 78.5
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.4e-94 350.1 218 78.4
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.5e-93 346.7 223 75.3
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 4.4e-93 345.1 223 75.3
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 7.5e-93 344.4 233 73.8
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 3.7e-92 342.0 224 75.0
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 3.1e-91 339.0 221 75.6
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.8e-89 332.0 225 74.2
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 5.0e-89 331.6 223 74.4
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.2e-87 327.0 223 72.6
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 4.7e-87 325.1 224 71.0
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 4.7e-87 325.1 192 83.9
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 6.1e-87 324.7 225 73.8
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 6.1e-87 324.7 192 82.8
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 8.0e-87 324.3 224 73.2
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.0e-86 323.9 196 80.6
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 2.3e-86 322.8 256 66.0
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 6.3e-84 314.7 196 76.5
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 4.1e-83 312.0 197 77.7
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.2e-82 310.5 257 64.6
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 1.2e-82 310.5 254 62.6
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 8.6e-81 304.3 218 72.0
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-79 300.4 192 78.6
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.8e-78 296.6 233 64.8
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 3.0e-78 295.8 194 73.7
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 5.2e-78 295.0 172 82.6
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 3.7e-76 288.9 227 66.5
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.9e-73 278.9 176 76.7
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.3e-72 275.4 223 64.6
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 2.6e-69 266.2 216 65.7
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 6.6e-65 251.5 223 60.5
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 6.2e-63 245.0 225 56.0
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.7e-57 226.9 197 59.9
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 6.6e-57 224.9 209 52.2
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 2.1e-55 219.9 203 51.7
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 6.2e-55 218.4 210 49.0
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.1e-54 217.6 226 54.9
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 6.6e-49 198.4 167 57.5
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 2.8e-39 166.4 166 56.0
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.0e-33 147.9 91 76.9
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 9.0e-30 134.8 75 86.7
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 3.5e-26 122.9 77 80.5
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 8.7e-25 118.2 94 70.2
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.3e-24 116.3 170 39.4
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 7.4e-24 115.2 79 77.2
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.6e-21 106.7 78 64.1
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 3.4e-21 106.3 79 72.2
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-20 104.4 95 65.3
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-20 102.4 74 63.5
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 4.9e-20 102.4 59 83.1
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 6.5e-20 102.1 188 39.4
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-17 94.4 79 65.8
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 3.9e-17 92.8 200 36.5
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 2.5e-16 90.1 75 62.7
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 3.3e-16 89.7 55 76.4
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 5.7e-16 89.0 207 33.8
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.8e-15 86.7 50 78.0
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 8.2e-15 85.1 55 72.7
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 8.2e-15 85.1 55 72.7
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 8.2e-15 85.1 110 44.5
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.4e-14 84.3 49 75.5
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 2.4e-14 83.6 221 30.3
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.2e-13 81.3 102 48.0
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 1.2e-13 81.3 89 50.6
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.8e-12 76.3 59 55.9
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-10 71.2 56 64.3
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 2.7e-10 70.1 93 46.2
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.8e-09 67.4 184 24.5
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.5e-08 64.3 168 26.8
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 3.3e-08 63.2 195 24.1
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 5.7e-08 62.4 203 24.1
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 7.4e-08 62.0 229 22.7
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 1.3e-07 61.2 170 24.1
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 1.3e-07 61.2 205 24.4
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 1.3e-07 61.2 170 24.1
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 2.2e-07 60.5 169 25.4
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 2.2e-07 60.5 170 24.1
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 3.7e-07 59.7 170 24.7
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 3.7e-07 59.7 202 23.3
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 4.8e-07 59.3 167 26.3
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.3e-07 58.9 203 23.6
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 6.3e-07 58.9 204 23.5
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 8.2e-07 58.5 202 22.3
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 8.2e-07 58.5 202 22.3
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 8.2e-07 58.5 169 22.5
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 8.2e-07 58.5 201 23.9
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.1e-06 58.2 202 23.8
EL10Ac1g01937 Beta vulgaris HOM05D005250 ORTHO05D006342 1.8e-06 57.4 59 52.5
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 1.8e-06 57.4 203 22.7
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 1.8e-06 57.4 202 26.2
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.4e-06 57.0 207 22.7
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 3.1e-06 56.6 168 22.6
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 3.1e-06 56.6 202 23.8
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 3.1e-06 56.6 203 24.1
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 4.1e-06 56.2 168 23.2
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 4.1e-06 56.2 168 23.2
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 5.3e-06 55.8 214 24.3
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 6.9e-06 55.5 169 24.3
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 6.9e-06 55.5 169 22.5
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 6.9e-06 55.5 203 25.1
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 9.0e-06 55.1 169 24.9


User provided reference genes

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