Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.0e-185 653.3 331 100.0
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.7e-106 389.4 302 66.9
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 3.5e-106 389.0 304 66.8
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.3e-105 386.3 299 66.2
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 2.4e-102 376.3 270 69.3
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 9.0e-102 374.4 320 61.9
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.0e-102 374.4 290 65.9
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 9.0e-102 374.4 261 69.3
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.5e-101 373.6 288 66.3
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.0e-101 373.2 275 68.0
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 2.6e-101 372.9 262 69.8
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 3.8e-100 369.0 322 59.9
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 9.3e-99 364.4 314 62.4
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.6e-98 363.6 322 59.0
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.6e-98 363.6 303 61.4
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 2.1e-98 363.2 270 65.9
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 5.1e-97 358.6 255 68.6
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 6.7e-97 358.2 274 63.1
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 8.7e-97 357.8 251 69.7
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 8.7e-97 357.8 254 70.9
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 4.3e-96 355.5 311 59.5
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 3.7e-95 352.4 276 65.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.1e-94 350.9 326 58.3
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-94 350.9 308 60.4
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.4e-94 350.5 321 58.3
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.8e-94 350.1 315 58.7
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 3.1e-94 349.4 273 64.5
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 4.1e-94 349.0 259 67.2
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.5e-93 347.1 328 55.5
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.5e-93 347.1 263 65.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 5.9e-93 345.1 258 65.1
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 7.7e-93 344.7 258 66.7
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.3e-92 344.0 306 58.2
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.9e-92 342.8 256 66.4
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 5.0e-92 342.0 269 63.6
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 8.5e-92 341.3 289 60.6
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 2.5e-91 339.7 257 65.8
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 4.2e-91 339.0 251 67.3
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 5.5e-91 338.6 258 66.3
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 7.2e-91 338.2 221 73.3
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 7.2e-91 338.2 289 59.9
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.2e-90 337.4 259 63.7
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 6.1e-90 335.1 258 65.5
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 7.9e-90 334.7 260 64.6
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.4e-89 334.0 278 61.2
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.3e-89 333.2 253 65.2
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 3.0e-89 332.8 311 56.9
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 3.0e-89 332.8 242 66.1
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.9e-89 332.4 318 55.3
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 5.1e-89 332.0 265 62.3
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 6.7e-89 331.6 272 58.5
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.1e-88 330.9 258 65.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.0e-88 330.1 274 62.8
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.5e-88 329.7 257 63.0
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 4.3e-88 328.9 320 54.7
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.2e-87 326.6 259 62.2
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.2e-87 326.6 218 71.1
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.8e-87 326.2 256 64.1
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 4.8e-87 325.5 221 70.1
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.1e-86 324.3 279 59.9
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 1.1e-86 324.3 352 50.9
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.4e-86 323.9 218 69.3
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 5.3e-86 322.0 294 58.2
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.6e-85 319.7 223 68.6
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 3.4e-85 319.3 352 51.1
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.7e-84 317.0 221 70.1
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.8e-84 315.8 270 60.0
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 6.5e-84 315.1 220 67.3
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 8.5e-84 314.7 287 55.7
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.9e-83 313.5 287 55.7
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.5e-83 313.2 291 57.0
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.2e-82 310.8 288 59.4
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 3.6e-82 309.3 297 52.9
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 6.1e-82 308.5 266 59.8
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 2.3e-81 306.6 316 52.5
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 3.9e-81 305.8 257 58.0
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.7e-81 305.1 280 57.1
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.5e-80 303.9 296 53.4
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 5.7e-80 302.0 310 52.6
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.7e-79 300.4 339 51.0
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.2e-79 300.1 305 52.1
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.2e-79 298.1 290 54.5
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.4e-78 297.4 306 53.3
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.4e-78 297.4 333 50.8
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.4e-78 296.6 257 58.0
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.1e-78 296.2 291 54.6
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 5.3e-78 295.4 275 54.5
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 7.0e-78 295.0 258 55.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.2e-77 294.3 290 53.8
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 3.5e-77 292.7 299 52.5
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.5e-77 292.4 251 57.4
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 5.0e-76 288.9 287 54.4
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 6.5e-76 288.5 259 56.4
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.5e-75 287.3 257 54.5
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 2.5e-75 286.6 244 62.3
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 4.2e-75 285.8 252 57.9
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 4.2e-75 285.8 253 57.3
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.1e-74 283.5 282 54.3
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.1e-74 283.5 312 49.7
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.7e-74 282.3 260 55.0
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.7e-74 282.3 260 55.0
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 8.0e-74 281.6 226 58.4
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-73 281.2 264 54.2
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-73 281.2 260 55.0
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.0e-73 281.2 285 53.3
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.4e-73 280.8 264 54.2
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.8e-73 280.4 264 54.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.8e-73 280.4 264 54.2
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 3.0e-73 279.6 269 52.0
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.2e-73 278.9 295 51.2
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 3.3e-72 276.2 254 58.3
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.5e-72 275.0 218 61.5
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.2e-71 273.5 247 58.3
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.2e-71 273.5 279 52.0
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 6.3e-71 271.9 258 53.9
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 8.2e-71 271.6 231 58.0
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.4e-70 270.8 245 56.7
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 2.4e-70 270.0 288 47.6
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.7e-68 263.8 216 59.3
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.2e-67 259.6 227 57.3
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.2e-67 259.2 268 51.9
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.2e-66 257.7 271 51.3
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 4.0e-65 252.7 256 52.3
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.2e-63 246.9 204 60.8
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 4.5e-61 239.2 177 66.1
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.3e-57 226.9 217 54.4
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.3e-57 226.9 217 54.8
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.7e-55 220.7 218 54.1
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 2.2e-55 220.3 206 53.9
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 2.2e-55 220.3 206 53.9
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 2.8e-55 219.9 206 54.9
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 4.9e-55 219.2 206 53.4
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 6.3e-55 218.8 206 54.4
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 8.3e-55 218.4 206 55.8
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.1e-54 218.0 257 47.5
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.4e-54 216.9 209 55.0
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.9e-53 212.2 214 52.3
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.9e-51 207.2 159 63.5
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 8.9e-49 198.4 146 66.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 8.9e-49 198.4 207 48.3
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 7.5e-48 195.3 166 62.0
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 2.2e-47 193.7 227 47.1
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.0e-44 184.9 235 46.4
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.5e-43 181.0 135 65.2
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 4.7e-42 176.0 134 62.7
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-40 171.4 166 53.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.6e-40 170.2 143 57.3
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 5.4e-38 162.5 124 64.5
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 9.5e-35 151.8 131 57.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 3.1e-33 146.7 122 59.0
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.1e-33 146.7 145 54.5
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.5e-32 144.4 261 37.5
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 2.0e-32 144.1 133 56.4
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-32 144.1 120 59.2
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 3.4e-32 143.3 233 38.2
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 5.8e-32 142.5 278 36.3
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 5.8e-32 142.5 136 52.2
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.5e-29 133.3 191 43.5
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 5.1e-28 129.4 251 33.1
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.8e-26 123.6 187 41.2
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.6e-24 117.1 83 66.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.8e-23 113.2 76 68.4
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.3e-20 104.8 89 57.3
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 3.0e-20 103.6 87 52.9
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 4.3e-19 99.8 84 54.8
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.8e-15 86.7 85 51.8
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 3.0e-12 77.0 181 37.6
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 1.6e-10 71.2 185 34.6
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 8.1e-10 68.9 166 33.1
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.8e-09 67.8 196 27.0
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 1.2e-08 65.1 74 51.4
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.0e-08 64.3 59 50.8
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 3.4e-08 63.5 151 31.8
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 6.4e-07 59.3 182 32.4
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 1.9e-06 57.8 123 35.8
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 4.2e-06 56.6 59 52.5


User provided reference genes

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