Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 5.7e-240 833.9 456 100.0
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.7e-151 540.0 458 72.1
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 6.5e-151 538.1 458 69.9
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 5.5e-150 535.0 454 71.6
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 9.4e-150 534.3 459 70.2
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.5e-147 526.9 467 68.3
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 2.0e-147 526.6 456 68.9
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 5.7e-147 525.0 458 69.9
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.3e-146 523.9 458 69.0
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 2.2e-146 523.1 454 70.0
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 6.3e-146 521.5 457 69.8
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.8e-145 520.0 450 69.3
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 2.4e-145 519.6 457 69.6
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 7.0e-145 518.1 458 69.0
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 3.5e-144 515.8 455 68.6
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 5.9e-144 515.0 469 67.4
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 7.7e-144 514.6 456 68.0
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.0e-143 511.9 456 67.5
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.5e-142 510.4 456 67.1
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 1.5e-142 510.4 455 67.9
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 9.4e-142 507.7 456 67.3
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 1.5e-139 500.4 421 72.2
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 4.8e-138 495.4 458 66.6
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 8.2e-138 494.6 455 66.6
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.6e-133 479.2 421 67.7
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 1.4e-132 477.2 455 65.9
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 4.0e-132 475.7 454 66.7
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 8.8e-132 474.6 455 65.1
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.5e-131 473.8 455 67.3
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 2.0e-131 473.4 429 65.7
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 4.4e-131 472.2 457 64.3
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.3e-130 470.7 466 63.9
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.2e-130 469.9 455 67.0
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 4.8e-130 468.8 457 64.3
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 1.1e-129 467.6 455 62.4
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.8e-129 466.8 383 71.0
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 7.0e-129 464.9 458 64.4
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 1.2e-128 464.2 452 61.3
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 5.9e-128 461.8 342 77.8
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 3.8e-127 459.1 469 62.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 5.0e-127 458.8 496 57.3
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 5.5e-126 455.3 454 61.0
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.6e-125 453.8 455 62.9
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 8.0e-125 451.4 432 62.5
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.4e-124 450.7 436 63.5
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 2.3e-124 449.9 435 63.7
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 2.3e-124 449.9 387 68.7
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 2.3e-124 449.9 505 58.6
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.4e-123 446.0 387 69.0
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.3e-122 444.1 435 63.7
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 1.7e-122 443.7 421 65.1
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 6.3e-122 441.8 390 69.0
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.1e-121 441.0 390 67.9
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.4e-121 440.7 454 61.2
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 2.4e-121 439.9 443 62.5
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 2.4e-121 439.9 443 60.7
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 7.0e-121 438.3 437 62.7
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 7.0e-121 438.3 432 63.4
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 2.7e-120 436.4 461 61.0
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 5.9e-120 435.3 435 63.0
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 7.8e-120 434.9 457 60.8
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.7e-119 433.7 443 59.4
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 3.8e-119 432.6 434 62.7
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 1.5e-118 430.6 376 69.9
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 2.5e-118 429.9 434 62.2
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 3.3e-118 429.5 381 71.1
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.2e-117 427.6 376 69.9
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 2.8e-117 426.4 371 70.1
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 3.6e-117 426.0 364 72.0
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 3.0e-116 422.9 376 67.3
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.5e-115 420.6 383 69.2
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 2.0e-115 420.2 385 69.4
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 7.5e-115 418.3 384 69.5
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.7e-114 417.2 366 70.8
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 2.2e-114 416.8 388 67.5
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.1e-113 414.5 428 61.4
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 3.2e-113 412.9 461 58.1
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 4.1e-113 412.5 367 70.6
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 5.4e-113 412.1 403 65.3
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 1.2e-112 411.0 384 68.5
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 3.5e-112 409.5 368 69.8
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 2.3e-111 406.8 384 68.0
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 2.3e-111 406.8 384 68.0
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 8.6e-111 404.8 369 69.6
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 8.6e-111 404.8 369 69.6
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 4.3e-110 402.5 297 71.0
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 7.3e-110 401.7 353 71.1
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 6.2e-109 398.7 352 67.6
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 2.3e-108 396.7 403 61.5
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 1.2e-107 394.4 353 70.5
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 3.4e-107 392.9 399 60.4
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.7e-106 390.6 396 61.9
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.4e-105 386.7 261 78.5
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.7e-103 380.6 421 59.4
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 8.6e-103 378.3 327 70.9
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 8.6e-103 378.3 389 62.2
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 2.6e-99 366.7 382 62.0
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 6.4e-98 362.1 325 65.8
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 1.5e-94 350.9 439 56.3
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 3.3e-94 349.7 443 53.7
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 5.8e-91 339.0 422 55.9
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.7e-90 337.4 249 71.5
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.0e-87 326.6 301 69.1
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.8e-76 290.8 230 70.4
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.5e-75 287.7 205 75.1
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 2.8e-69 266.9 372 47.0
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 3.7e-69 266.5 347 54.2
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 4.2e-65 253.1 276 62.7
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 6.0e-64 249.2 322 52.5
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 3.2e-57 226.9 343 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 1.3e-55 221.5 315 47.0
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.3e-55 221.5 322 50.3
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.5e-54 217.2 355 46.5
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 3.7e-53 213.4 134 82.8
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.1e-52 209.9 241 48.5
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 4.2e-41 173.3 123 73.2
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 9.4e-41 172.2 238 58.0
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.4e-39 168.3 285 37.5
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 7.0e-36 156.0 239 39.7
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 7.4e-30 136.0 77 90.9
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 7.5e-22 109.4 154 51.3
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 2.2e-18 97.8 60 80.0
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.4e-12 78.6 167 37.1
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 8.6e-10 69.3 107 43.0
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 5.7e-06 56.6 164 32.3


User provided reference genes

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