Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 9.9e-173 610.1 335 100.0
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 2.8e-42 176.8 343 39.4
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 1.3e-31 141.4 348 36.2
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 1.7e-31 141.0 334 34.7
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.2e-31 140.6 332 37.3
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 3.8e-31 139.8 344 36.0
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.4e-30 137.9 332 36.7
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 1.4e-30 137.9 348 32.8
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 9.3e-30 135.2 348 32.5
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 9.3e-30 135.2 344 33.7
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.6e-29 134.4 348 36.2
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.7e-29 133.7 330 35.8
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.6e-29 132.9 348 35.9
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 7.9e-29 132.1 330 36.1
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 1.0e-28 131.7 346 35.8
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 1.0e-28 131.7 350 34.3
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.3e-28 130.6 330 35.5
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 3.0e-28 130.2 352 33.8
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.9e-28 129.8 329 35.3
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.1e-27 128.3 345 33.6
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.3e-27 126.3 334 36.5
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 2.2e-26 124.0 346 34.4
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 3.7e-26 123.2 347 34.3
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 8.2e-26 122.1 337 31.8
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 2.4e-25 120.6 342 34.5
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 3.1e-25 120.2 332 32.8
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 4.1e-25 119.8 356 32.6
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 4.1e-25 119.8 338 32.8
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 5.3e-25 119.4 334 33.8
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.6e-24 117.1 318 30.8
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 3.4e-24 116.7 344 32.0
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 7.6e-24 115.5 322 32.9
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 1.0e-23 115.2 339 34.2
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 1.0e-23 115.2 350 31.4
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.0e-23 115.2 335 31.6
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.3e-23 114.8 330 32.1
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 1.3e-23 114.8 355 30.7
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 1.7e-23 114.4 335 34.3
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 2.2e-23 114.0 335 32.2
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 2.2e-23 114.0 299 34.1
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 2.2e-23 114.0 349 30.9
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 2.2e-23 114.0 349 30.9
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 2.2e-23 114.0 326 33.7
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 5.0e-23 112.8 354 32.5
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 5.0e-23 112.8 346 30.3
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 8.5e-23 112.1 328 33.5
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 1.1e-22 111.7 330 34.2
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 1.1e-22 111.7 333 33.3
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 1.4e-22 111.3 347 31.4
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 1.9e-22 110.9 334 31.1
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 1.9e-22 110.9 328 32.3
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 2.5e-22 110.5 343 31.2
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 2.5e-22 110.5 343 30.9
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 2.5e-22 110.5 343 31.2
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.5e-22 110.5 327 32.1
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 4.2e-22 109.8 306 32.7
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 9.4e-22 108.6 326 33.7
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 1.2e-21 108.2 358 31.8
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 1.6e-21 107.8 329 33.7
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 2.7e-21 107.1 236 37.7
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 2.7e-21 107.1 341 32.3
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 4.6e-21 106.3 340 29.4
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 6.1e-21 105.9 276 34.8
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 6.1e-21 105.9 322 29.2
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 7.9e-21 105.5 338 32.2
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 1.4e-20 104.8 347 29.1
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.4e-20 104.8 309 30.1
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.3e-20 104.0 288 29.5
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 3.0e-20 103.6 335 32.5
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 3.0e-20 103.6 301 33.9
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 8.8e-20 102.1 318 29.9
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 8.8e-20 102.1 338 31.1
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.9e-19 100.9 339 30.1
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 3.3e-19 100.1 330 31.8
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.3e-19 99.8 307 31.6
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 1.7e-18 97.8 346 32.4
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 2.2e-18 97.4 316 30.4
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.2e-18 97.4 351 30.2
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 4.8e-18 96.3 352 30.4
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 4.8e-18 96.3 351 30.2
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 8.2e-18 95.5 355 29.9
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 1.4e-17 94.7 331 31.1
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 1.8e-17 94.4 359 30.1
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 2.4e-17 94.0 291 33.7
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 3.1e-17 93.6 346 31.2
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 9.1e-17 92.0 347 29.4
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 9.1e-17 92.0 235 34.5
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 1.5e-16 91.3 344 28.5
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 1.5e-16 91.3 339 31.0
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 1.5e-16 91.3 348 31.6
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 2.6e-16 90.5 340 28.8
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.6e-16 90.5 315 29.5
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 3.4e-16 90.1 287 30.7
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 4.5e-16 89.7 337 34.4
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 4.5e-16 89.7 344 31.1
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 4.5e-16 89.7 324 31.8
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 5.9e-16 89.4 265 33.6
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 1.0e-15 88.6 323 29.4
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 1.3e-15 88.2 318 28.3
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 1.7e-15 87.8 325 29.5
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 2.2e-15 87.4 247 35.2
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 2.9e-15 87.0 302 29.1
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 2.9e-15 87.0 323 32.2
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 6.5e-15 85.9 232 33.6
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 6.5e-15 85.9 320 30.0
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 8.5e-15 85.5 298 30.9
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.4e-14 84.7 313 29.4
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 1.9e-14 84.3 179 34.6
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 5.5e-14 82.8 371 29.4
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 9.4e-14 82.0 316 27.8
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 9.4e-14 82.0 321 27.4
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 1.2e-13 81.6 224 35.3
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.2e-13 81.6 296 30.1
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 1.6e-13 81.3 329 32.2
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.6e-13 81.3 321 27.1
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 2.1e-13 80.9 203 34.0
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 3.6e-13 80.1 281 32.0
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.6e-13 80.1 315 28.6
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 3.6e-13 80.1 220 33.2
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 4.7e-13 79.7 334 29.3
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 4.7e-13 79.7 320 29.4
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 3.0e-12 77.0 233 34.3
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 3.9e-12 76.6 351 27.9
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 3.9e-12 76.6 328 31.1
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 6.7e-12 75.9 344 27.6
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 6.7e-12 75.9 359 29.0
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 8.8e-12 75.5 330 27.3
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 1.5e-11 74.7 334 29.6
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.5e-11 74.7 212 33.5
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 2.6e-11 73.9 316 28.5
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.4e-11 73.2 289 27.7
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 7.4e-11 72.4 336 28.6
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 9.7e-11 72.0 314 29.9
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 9.7e-11 72.0 301 28.2
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 4.8e-10 69.7 309 27.5
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.8e-09 67.8 215 29.8
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.4e-09 67.4 304 28.3
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 3.1e-09 67.0 323 27.6
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 5.3e-09 66.2 253 31.6
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.6e-08 63.9 312 27.9
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 4.5e-08 63.2 182 31.3
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 1.7e-07 61.2 148 33.8
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 1.7e-07 61.2 148 33.8
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 2.2e-07 60.8 350 27.4
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 8.5e-07 58.9 188 34.0
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 1.1e-06 58.5 170 30.0
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 1.9e-06 57.8 247 30.0
RcHm_v2.0_Chr3g0469671 Rosa chinensis HOM05D017210 ORTHO05D019186 2.5e-06 57.4 300 26.7
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 3.2e-06 57.0 220 28.2
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 4.2e-06 56.6 180 31.7
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 7.2e-06 55.8 163 33.7


User provided reference genes

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