Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.3e-87 326.6 200 100.0
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.4e-86 323.2 200 95.0
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 5.2e-36 155.2 191 54.5
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 6.8e-36 154.8 191 50.8
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.0e-35 153.3 190 50.0
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 3.4e-35 152.5 164 62.2
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 3.4e-35 152.5 200 60.5
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 5.8e-35 151.8 190 51.6
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 7.5e-35 151.4 197 58.4
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 2.9e-34 149.4 206 51.0
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 8.3e-34 147.9 166 65.1
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.1e-33 147.5 134 61.2
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.4e-33 147.1 126 65.9
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.8e-33 146.7 167 52.1
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.8e-33 146.7 197 50.8
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 2.4e-33 146.4 197 48.7
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 5.4e-33 145.2 132 61.4
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.6e-32 143.7 94 81.9
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 2.0e-32 143.3 137 65.0
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 2.7e-32 142.9 197 48.2
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 3.5e-32 142.5 204 48.0
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 3.5e-32 142.5 139 74.1
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 6.0e-32 141.7 197 47.2
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 7.8e-32 141.4 175 50.9
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 7.8e-32 141.4 97 75.3
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 1.0e-31 141.0 192 58.3
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.0e-31 141.0 194 49.5
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.3e-31 140.6 97 74.2
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.7e-31 140.2 91 82.4
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.7e-31 140.2 91 82.4
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 1.7e-31 140.2 187 48.7
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 3.0e-31 139.4 135 58.5
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 3.0e-31 139.4 97 75.3
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 3.0e-31 139.4 176 62.5
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.0e-31 139.4 206 50.5
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 3.9e-31 139.0 187 48.1
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 5.0e-31 138.7 195 48.2
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 5.0e-31 138.7 155 61.9
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 5.0e-31 138.7 155 61.9
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 6.6e-31 138.3 99 75.8
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 6.6e-31 138.3 200 46.5
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 8.6e-31 137.9 96 74.0
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 8.6e-31 137.9 94 76.6
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 8.6e-31 137.9 96 74.0
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 8.6e-31 137.9 189 48.1
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 8.6e-31 137.9 198 47.5
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.1e-30 137.5 196 49.0
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 1.1e-30 137.5 94 75.5
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.1e-30 137.5 197 50.8
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.1e-30 137.5 96 74.0
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 1.1e-30 137.5 181 49.2
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.1e-30 137.5 127 70.1
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.5e-30 137.1 194 45.4
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.5e-30 137.1 194 45.9
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 1.5e-30 137.1 203 49.8
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.5e-30 137.1 203 49.8
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.9e-30 136.7 92 78.3
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.9e-30 136.7 92 78.3
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.9e-30 136.7 98 72.4
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.9e-30 136.7 96 74.0
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.9e-30 136.7 142 59.9
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.9e-30 136.7 203 50.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 3.3e-30 136.0 94 75.5
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 4.3e-30 135.6 198 50.0
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 4.3e-30 135.6 94 74.5
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.3e-30 135.6 193 48.2
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 5.6e-30 135.2 97 72.2
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 5.6e-30 135.2 200 50.0
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 7.3e-30 134.8 93 75.3
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 7.3e-30 134.8 93 75.3
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 7.3e-30 134.8 93 75.3
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 7.3e-30 134.8 198 50.5
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 9.5e-30 134.4 96 72.9
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 9.5e-30 134.4 193 47.7
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.2e-29 134.0 197 52.3
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.6e-29 133.7 93 75.3
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.6e-29 133.7 197 47.2
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 2.1e-29 133.3 209 47.8
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 3.6e-29 132.5 91 75.8
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 4.7e-29 132.1 96 72.9
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 4.7e-29 132.1 93 74.2
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 6.2e-29 131.7 200 45.0
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 6.2e-29 131.7 197 43.7
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 8.0e-29 131.3 202 44.1
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 8.0e-29 131.3 132 58.3
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 1.1e-28 131.0 95 70.5
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.1e-28 131.0 132 59.1
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 1.4e-28 130.6 201 48.8
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.4e-28 130.6 97 70.1
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.8e-28 130.2 199 46.7
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 3.1e-28 129.4 94 73.4
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.1e-28 129.4 194 50.5
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 8.9e-28 127.9 93 72.0
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 8.9e-28 127.9 98 69.4
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.2e-27 127.5 87 75.9
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.0e-27 126.7 128 56.2
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 2.0e-27 126.7 135 57.0
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 2.6e-27 126.3 96 68.8
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 2.6e-27 126.3 129 58.1
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 4.4e-27 125.6 190 44.2
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.9e-26 122.9 158 57.0
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 3.7e-26 122.5 172 47.7
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 4.9e-26 122.1 96 67.7
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.9e-25 120.2 83 74.7
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.9e-25 120.2 82 75.6
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 3.2e-25 119.4 135 53.3
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 3.0e-23 112.8 72 80.6
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.5e-22 110.5 97 60.8
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 3.3e-22 109.4 79 72.2
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 5.6e-22 108.6 95 58.9
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 9.5e-22 107.8 82 68.3
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 2.0e-19 100.1 76 71.1
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 2.9e-18 96.3 85 60.0
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 3.7e-18 95.9 86 55.8
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 8.3e-18 94.7 100 56.0
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 8.3e-18 94.7 100 53.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.5e-14 83.2 70 68.6
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.4e-12 77.4 85 41.2
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.8e-12 77.0 58 67.2
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 4.0e-12 75.9 116 53.4
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.9e-12 74.7 57 71.9
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 1.5e-11 73.9 58 72.4
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.5e-11 73.9 45 82.2
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 2.0e-11 73.6 131 42.7
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 5.8e-11 72.0 86 47.7
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.9e-09 67.0 136 39.0
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 2.1e-08 63.5 54 61.1
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.7e-08 63.2 85 36.5
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 4.6e-08 62.4 56 53.6
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 1.7e-07 60.5 138 33.3
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 7.3e-06 55.1 95 52.6
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 9.6e-06 54.7 146 36.3


User provided reference genes

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