Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2577 Cannabis sativa HOM05D007592 ORTHO05D004645 3.5e-136 488.4 270 100.0
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 3.4e-75 285.8 257 73.9
CANSAT64G0010 Cannabis sativa HOM05D007592 ORTHO05D004645 2.1e-48 196.8 119 85.7
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 2.0e-46 190.3 216 56.5
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 2.6e-46 189.9 216 56.5
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 5.7e-46 188.7 216 56.5
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 2.2e-45 186.8 221 54.3
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 2.2e-45 186.8 216 55.6
CANSAT25G1186 Cannabis sativa HOM05D007592 ORTHO05D004645 1.7e-42 177.2 119 80.7
CANSAT54G1431 Cannabis sativa HOM05D007592 ORTHO05D004645 8.6e-34 148.3 170 64.7
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.9e-33 147.1 214 45.8
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 1.6e-32 144.1 213 42.7
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 4.7e-32 142.5 213 42.7
Ciclev10033648m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.0e-31 141.4 167 52.7
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 3.4e-30 136.3 224 43.3
CANSAT11G0484 Cannabis sativa HOM05D007743 ORTHO05D004645 2.2e-29 133.7 133 61.7
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 8.3e-29 131.7 213 44.6
Ciclev10027215m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.1e-28 131.3 204 45.1
Thhalv10019741m.g Eutrema salsugineum HOM05D007592 ORTHO05D004645 4.7e-24 115.9 192 43.8
C04p29390 Brassica napus HOM05D007592 ORTHO05D004645 6.2e-24 115.5 143 50.3
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 1.4e-23 114.4 193 43.5
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 5.2e-23 112.5 203 38.4
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 4.4e-22 109.4 220 37.3
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 5.8e-22 109.0 218 36.2
Atru.chr13.1766 Acer truncatum HOM05D007592 ORTHO05D004645 3.2e-20 103.2 191 40.3
AT2G13760 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 5.4e-20 102.4 180 43.3
BcaNung00662 Brassica carinata HOM05D007592 ORTHO05D004645 5.4e-20 102.4 157 47.8
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 5.4e-20 102.4 215 34.9
Atru.chr8.1335 Acer truncatum HOM05D007592 ORTHO05D004645 1.6e-19 100.9 175 41.1
Ciclev10023655m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.6e-19 100.9 194 40.2
Atru.chr3.1033 Acer truncatum HOM05D007592 ORTHO05D004645 4.6e-19 99.4 152 44.7
AL6G36070 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.0e-18 98.2 233 34.8
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 2.3e-18 97.1 229 34.9
CANSAT01G0035 Cannabis sativa HOM05D007592 ORTHO05D004645 3.0e-18 96.7 119 67.2
Ciclev10003711m.g Citrus clementina HOM05D007592 ORTHO05D004645 3.9e-18 96.3 115 47.0
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.9e-18 96.3 229 34.9
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.9e-18 96.3 229 34.9
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.9e-18 96.3 229 34.9
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.9e-18 96.3 229 34.9
CANSAT11G1366 Cannabis sativa HOM05D007592 ORTHO05D004645 1.1e-17 94.7 101 54.5
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.5e-17 94.4 229 34.5
Ciclev10003950m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.9e-17 94.0 70 65.7
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.9e-17 94.0 229 34.5
BraA06t26442Z Brassica rapa HOM05D007592 ORTHO05D004645 2.8e-16 90.1 84 60.7
Atru.chr11.101 Acer truncatum HOM05D007592 ORTHO05D004645 3.6e-16 89.7 222 36.0
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 6.2e-16 89.0 224 33.9
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 1.8e-15 87.4 189 38.6
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 4.0e-15 86.3 228 33.8
Atru.chr6.1370 Acer truncatum HOM05D007592 ORTHO05D004645 8.9e-15 85.1 164 37.2
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 8.9e-15 85.1 225 33.8
FAN18G2940 Fragaria x ananassa HOM05D007743 ORTHO05D004645 2.0e-14 84.0 212 35.4
Atru.chr12.1217 Acer truncatum HOM05D007592 ORTHO05D004645 3.4e-14 83.2 162 39.5
Atru.chr5.2435 Acer truncatum HOM05D007743 ORTHO05D004645 3.4e-14 83.2 221 33.5
AL1G54420 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 4.4e-14 82.8 109 46.8
Atru.chr3.1639 Acer truncatum HOM05D007592 ORTHO05D004645 7.6e-14 82.0 129 42.6
Migut.A00242 Erythranthe guttata HOM05D007592 ORTHO05D004645 7.6e-14 82.0 210 33.3
Manes.13G094101 Manihot esculenta HOM05D007592 ORTHO05D004645 1.3e-13 81.3 206 32.0
Manes.07G048750 Manihot esculenta HOM05D007592 ORTHO05D004645 1.7e-13 80.9 178 34.3
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 1.7e-13 80.9 218 31.7
Atru.chr11.1181 Acer truncatum HOM05D000214 ORTHO05D000131 3.7e-13 79.7 80 53.8
Atru.chr4.1791 Acer truncatum HOM05D007592 ORTHO05D004645 4.9e-13 79.3 106 47.2
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 4.9e-13 79.3 194 32.0
FvH4_2g00671 Fragaria vesca HOM05D007743 ORTHO05D004645 1.4e-12 77.8 176 35.2
Manes.01G069750 Manihot esculenta HOM05D007592 ORTHO05D004645 1.4e-12 77.8 178 33.1
AL2G23940 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 2.4e-12 77.0 172 33.7
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 2.4e-12 77.0 176 35.8
FvH4_1g29461 Fragaria vesca HOM05D007743 ORTHO05D010219 5.4e-12 75.9 149 36.9
Atru.chr6.863 Acer truncatum HOM05D007592 ORTHO05D004645 7.1e-12 75.5 191 35.6
Manes.03G086209 Manihot esculenta HOM05D007592 ORTHO05D004645 7.1e-12 75.5 66 54.5
Manes.12G071166 Manihot esculenta HOM05D007743 ORTHO05D010219 7.1e-12 75.5 66 54.5
Manes.14G157656 Manihot esculenta HOM05D007743 ORTHO05D010219 9.2e-12 75.1 69 52.2
AL8G44460 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.2e-11 74.7 213 31.5
CARHR184030 Cardamine hirsuta HOM05D007592 ORTHO05D004645 2.1e-11 73.9 109 45.0
Atru.chr10.191 Acer truncatum HOM05D007592 ORTHO05D004645 2.7e-11 73.6 101 48.5
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 6.0e-11 72.4 68 51.5
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 1.3e-10 71.2 68 50.0
CSS0013406 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 1.3e-10 71.2 175 32.0
Manes.15G155750 Manihot esculenta HOM05D007743 ORTHO05D010219 1.3e-10 71.2 59 57.6
BcaB08g34421 Brassica carinata HOM05D007743 ORTHO05D004645 1.7e-10 70.9 68 45.6
Oeu019651.1 Olea europaea HOM05D007592 ORTHO05D004645 3.9e-10 69.7 69 46.4
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 5.1e-10 69.3 66 48.5
CARHR103730 Cardamine hirsuta HOM05D007592 ORTHO05D004645 5.1e-10 69.3 171 32.7
AL9U10800 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 8.6e-10 68.6 106 42.5
BcaB04g19609 Brassica carinata HOM05D007743 ORTHO05D004645 1.1e-09 68.2 66 48.5
FAN09G4280 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.3e-09 66.6 199 32.7
AL5G14150 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 4.3e-09 66.2 61 52.5
CARHR180790 Cardamine hirsuta HOM05D007592 ORTHO05D004645 5.6e-09 65.9 110 40.9
FAN09G0506 Fragaria x ananassa HOM05D007743 ORTHO05D004645 7.3e-09 65.5 223 29.6
Oeu053537.1 Olea europaea HOM05D007592 ORTHO05D004645 1.6e-08 64.3 105 39.0
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 2.1e-08 63.9 65 46.2
Oeu023351.1 Olea europaea HOM05D007592 ORTHO05D004645 3.6e-08 63.2 186 31.2
AT1G66235 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.4e-07 61.2 210 29.0
AL1G39540 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 2.4e-07 60.5 61 45.9
BcaC01g02275 Brassica carinata HOM05D007743 ORTHO05D004645 3.1e-07 60.1 98 39.8
BolC1t03512H Brassica oleracea HOM05D007592 ORTHO05D014827 1.2e-06 58.2 91 41.8
Manes.03G096216 Manihot esculenta HOM05D007592 ORTHO05D004645 1.5e-06 57.8 184 27.7
PGSC0003DMG400037078 Solanum tuberosum HOM05D008583 ORTHO05D004645 2.6e-06 57.0 131 32.8
PGSC0003DMG400046067 Solanum tuberosum HOM05D007592 ORTHO05D004645 2.6e-06 57.0 99 36.4
BcaB02g10737 Brassica carinata HOM05D007743 ORTHO05D004645 4.4e-06 56.2 89 37.1
CSS0008814 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.8e-06 55.8 175 31.4
CSS0008946 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.8e-06 55.8 175 31.4
CSS0011061 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.8e-06 55.8 175 31.4
CSS0023642 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.8e-06 55.8 175 31.4
CSS0041053 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.8e-06 55.8 175 31.4


User provided reference genes

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