Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 0.0e+00 1295.4 674 100.0
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 5.7e-252 874.4 674 68.1
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 3.1e-250 868.6 686 66.5
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 4.6e-246 854.7 684 65.8
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.0e-245 853.6 680 66.2
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.5e-244 849.7 677 66.6
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 7.4e-244 847.4 685 65.7
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 3.7e-243 845.1 686 64.6
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.9e-240 835.5 684 64.8
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.5e-239 831.2 686 64.3
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.6e-238 829.7 681 66.5
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 1.4e-237 826.6 678 65.0
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 5.7e-236 821.2 635 68.2
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 7.4e-236 820.8 688 64.0
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.1e-234 817.0 785 58.3
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 1.8e-234 816.2 682 66.3
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.1e-234 815.1 680 64.6
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 7.7e-233 810.8 690 64.3
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 1.3e-232 810.1 752 60.1
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.9e-232 808.9 676 62.9
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.2e-231 805.4 677 64.0
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 3.9e-229 798.5 694 61.1
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 7.4e-228 794.3 680 62.4
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 4.5e-225 785.0 620 66.5
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 5.9e-225 784.6 725 59.9
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 2.2e-224 782.7 674 61.3
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 2.5e-223 779.2 683 64.6
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 7.2e-223 777.7 618 65.0
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.2e-222 776.9 733 59.1
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 1.6e-222 776.5 674 60.8
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 4.7e-222 775.0 682 60.4
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.4e-221 773.5 743 58.1
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.4e-221 773.5 689 59.9
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 1.8e-221 773.1 695 58.8
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.0e-221 772.3 743 58.3
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 5.2e-221 771.5 726 58.5
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 5.2e-221 771.5 726 58.5
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 8.8e-221 770.8 681 60.9
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 8.8e-221 770.8 669 61.0
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 7.5e-220 767.7 681 60.8
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 2.2e-219 766.1 695 60.6
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.1e-218 763.8 692 58.7
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 3.1e-218 762.3 653 61.1
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 7.0e-218 761.1 664 60.4
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 9.1e-218 760.8 629 63.3
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 2.7e-217 759.2 681 61.4
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.0e-216 757.3 681 62.4
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 5.0e-216 755.0 647 61.5
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 5.0e-216 755.0 656 63.7
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.1e-215 753.8 687 59.5
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.9e-215 753.1 681 58.9
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 9.4e-215 750.7 691 58.8
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 9.4e-215 750.7 658 60.8
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.6e-214 750.0 703 57.5
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 1.6e-214 750.0 690 58.4
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 2.7e-214 749.2 691 58.6
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 2.7e-214 749.2 705 60.4
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 8.0e-214 747.7 691 58.0
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 3.0e-213 745.7 671 60.2
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 2.0e-212 743.0 704 57.5
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 4.4e-212 741.9 706 57.5
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 5.7e-212 741.5 667 59.5
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.8e-211 739.2 658 61.7
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.4e-210 736.9 695 58.1
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 5.4e-210 734.9 749 56.6
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 3.5e-209 732.3 687 56.9
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 4.5e-209 731.9 683 56.8
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.3e-208 729.6 689 58.9
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 2.9e-208 729.2 637 62.5
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 3.8e-208 728.8 607 62.4
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.2e-206 723.8 695 57.3
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.0e-205 720.7 696 57.0
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 6.8e-205 718.0 659 58.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 5.7e-204 714.9 691 55.0
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 1.7e-203 713.4 552 67.8
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 2.2e-203 713.0 696 56.6
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 2.2e-203 713.0 657 58.0
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 3.7e-203 712.2 659 58.3
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 3.1e-202 709.1 701 56.9
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 7.0e-202 708.0 695 55.4
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.7e-201 706.1 682 57.9
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.5e-201 705.3 646 58.0
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 4.5e-201 705.3 667 59.5
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 9.5e-199 697.6 638 57.4
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 6.1e-198 694.9 638 56.3
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 6.1e-198 694.9 709 55.4
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 2.3e-197 693.0 682 54.7
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 3.4e-196 689.1 696 54.9
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.8e-196 687.6 615 60.7
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 2.2e-195 686.4 695 54.1
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.9e-195 686.0 696 54.3
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 6.4e-195 684.9 627 57.7
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.6e-193 680.2 690 55.1
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 3.9e-192 675.6 691 54.4
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 5.0e-192 675.2 702 55.8
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 6.6e-192 674.9 660 55.5
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 1.1e-191 674.1 693 55.0
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.5e-191 673.7 693 55.0
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.3e-191 672.5 662 56.8
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 9.5e-191 671.0 640 56.2
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.2e-190 670.6 659 54.6
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.8e-190 669.5 653 57.0
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 8.0e-190 667.9 634 56.8
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 2.0e-188 663.3 647 56.4
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 3.4e-188 662.5 684 53.7
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 9.2e-186 654.4 700 54.3
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.1e-185 653.3 615 58.5
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.6e-185 652.1 637 55.7
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 1.3e-184 650.6 651 54.2
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 3.3e-183 646.0 568 60.9
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.2e-182 641.7 663 54.3
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 8.1e-182 641.3 612 57.7
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 6.8e-181 638.3 586 61.3
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 6.8e-181 638.3 646 54.5
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 3.4e-180 636.0 665 52.2
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 1.7e-179 633.6 664 53.2
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 5.4e-178 628.6 673 53.0
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 7.8e-177 624.8 663 51.6
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 1.9e-175 620.2 606 56.4
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 1.4e-173 614.0 655 51.9
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 8.9e-173 611.3 679 53.8
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 5.8e-172 608.6 691 50.2
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 1.7e-171 607.1 669 52.3
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 7.1e-170 601.7 653 50.5
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 9.6e-167 591.3 460 68.3
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.2e-166 590.9 510 62.0
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.4e-165 587.4 656 49.1
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.0e-164 583.6 676 49.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 4.0e-157 559.3 480 60.0
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.5e-156 557.4 694 46.0
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 1.8e-152 543.9 662 50.2
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 1.4e-149 534.3 684 48.4
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 7.4e-135 485.3 498 54.2
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.3e-134 484.6 510 53.1
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 1.9e-130 470.7 741 41.8
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.4e-128 464.5 410 60.7
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.4e-125 453.8 388 63.9
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.0e-120 436.8 660 41.8
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.7e-119 432.6 667 40.6
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.2e-116 424.9 674 40.7
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 2.7e-113 413.7 649 40.1
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.8e-112 411.0 627 40.7
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 2.6e-108 397.1 637 39.7
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.2e-106 390.2 618 39.5
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 4.0e-104 383.3 738 36.4
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.7e-103 379.4 649 39.1
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.7e-102 376.7 757 37.6
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 9.8e-95 352.1 647 37.9
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 2.5e-90 337.4 827 31.8
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.0e-88 330.5 213 77.9
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 4.4e-87 326.6 572 37.9
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.3e-86 325.1 744 32.8
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.7e-86 324.7 545 39.4
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 2.7e-84 317.4 279 62.4
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 5.9e-84 316.2 482 41.1
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.7e-83 314.7 209 74.2
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 5.8e-79 299.7 341 48.4
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.4e-77 295.0 516 38.4
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.9e-70 270.0 508 35.2
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 7.1e-61 239.6 334 39.8
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.2e-36 159.1 235 41.3
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 5.8e-31 140.2 110 63.6
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 8.7e-27 126.3 73 80.8
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 1.1e-24 119.4 186 38.7
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 5.3e-24 117.1 66 84.8
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 2.5e-21 108.2 70 72.9
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.1e-20 105.1 109 53.2
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 6.5e-14 83.6 170 37.6
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 5.5e-13 80.5 153 35.9
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 2.1e-12 78.6 52 71.2
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 3.9e-11 74.3 67 58.2
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 9.7e-10 69.7 112 40.2
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 3.7e-09 67.8 54 57.4
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 2.9e-06 58.2 86 39.5


User provided reference genes

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