Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2535 Cannabis sativa HOM05D006015 ORTHO05D007816 4.9e-265 917.1 435 100.0
CiPaw.04G196900 Carya illinoinensis HOM05D006015 ORTHO05D007816 8.8e-198 693.7 427 77.5
Potri.014G167200 Populus trichocarpa HOM05D006015 ORTHO05D007816 9.8e-197 690.3 432 76.4
Duzib211G0350 Durio zibethinus HOM05D006015 ORTHO05D007816 3.1e-195 685.3 432 73.8
Gohir.A11G149000 Gossypium hirsutum HOM05D006015 ORTHO05D007816 4.1e-195 684.9 431 74.9
Sabra14G0127200 Salix brachista HOM05D006015 ORTHO05D007816 4.1e-195 684.9 425 76.5
COL.COLO4_33334 Corchorus olitorius HOM05D006015 ORTHO05D007816 1.6e-194 682.9 422 76.1
Gohir.D11G156100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 2.0e-194 682.6 431 74.5
QL04p068533 Quercus lobata HOM05D006015 ORTHO05D007816 2.7e-194 682.2 427 74.7
Cfa014228 Carpinus fangiana HOM05D006015 ORTHO05D007816 4.5e-194 681.4 427 75.9
Gorai.007G166200 Gossypium raimondii HOM05D006015 ORTHO05D007816 1.3e-193 679.9 431 74.0
FAN09G3933 Fragaria x ananassa HOM05D006015 ORTHO05D007816 1.7e-193 679.5 424 74.8
FAN02G2834 Fragaria x ananassa HOM05D006015 ORTHO05D007816 6.6e-193 677.6 424 74.5
Thecc.01G195800 Theobroma cacao HOM05D006015 ORTHO05D007816 2.5e-192 675.6 432 74.3
Duzib138G1954 Durio zibethinus HOM05D006015 ORTHO05D007816 4.2e-192 674.9 433 73.9
RcHm_v2.0_Chr2g0156011 Rosa chinensis HOM05D006015 ORTHO05D007816 5.5e-192 674.5 426 73.9
FAN14G1195 Fragaria x ananassa HOM05D006015 ORTHO05D007816 9.5e-192 673.7 424 74.1
MD17G1116800 Malus domestica HOM05D006015 ORTHO05D007816 1.2e-191 673.3 426 74.2
FAN05G5154 Fragaria x ananassa HOM05D006015 ORTHO05D007816 1.6e-191 672.9 424 74.3
FvH4_6g40640 Fragaria vesca HOM05D006015 ORTHO05D007816 6.1e-191 671.0 424 73.6
MD09G1126500 Malus domestica HOM05D006015 ORTHO05D007816 1.0e-190 670.2 426 74.4
Gorai.001G221700 Gossypium raimondii HOM05D006015 ORTHO05D007816 5.2e-190 667.9 422 73.5
Gohir.D07G198100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 4.4e-189 664.8 422 73.2
Dinv26607 Davidia involucrata HOM05D006015 ORTHO05D007816 3.7e-188 661.8 435 72.2
TWI18G0302 Tripterygium wilfordii HOM05D006015 ORTHO05D007816 3.7e-188 661.8 433 73.2
TWI75G1720 Tripterygium wilfordii HOM05D006015 ORTHO05D007816 2.4e-187 659.1 420 74.8
VMungo0720G1520 Vigna mungo HOM05D006015 ORTHO05D007816 9.2e-187 657.1 424 73.3
Ciclev10015287m.g Citrus clementina HOM05D006015 ORTHO05D007816 2.9e-185 652.1 435 72.9
PGR083G2314 Punica granatum HOM05D006015 ORTHO05D007816 2.9e-185 652.1 430 71.6
CSS0038739 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 3.8e-185 651.7 424 71.7
Manes.12G065800 Manihot esculenta HOM05D006015 ORTHO05D007816 6.6e-185 651.0 424 73.1
Ca_25000_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 8.6e-185 650.6 436 71.6
Ca_30801_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 8.6e-185 650.6 436 71.6
Rhsim04G0027900 Rhododendron simsii HOM05D006015 ORTHO05D007816 8.6e-185 650.6 424 72.2
Cc08_g02360 Coffea canephora HOM05D006015 ORTHO05D007816 5.6e-184 647.9 429 69.2
CSS0001355 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 7.3e-184 647.5 424 71.2
CSS0036117 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 7.3e-184 647.5 424 71.2
Phvul.007G239000 Phaseolus vulgaris HOM05D006015 ORTHO05D007816 7.3e-184 647.5 433 70.9
HanXRQChr11g0329021 Helianthus annuus HOM05D006015 ORTHO05D007816 1.2e-183 646.7 422 70.9
Medtr1g046210 Medicago truncatula HOM05D006015 ORTHO05D007816 1.2e-183 646.7 423 71.4
Lj6g0021297 Lotus japonicus HOM05D006015 ORTHO05D007816 2.1e-183 646.0 422 71.6
Eucgr.H00879 Eucalyptus grandis HOM05D006015 ORTHO05D007816 2.8e-183 645.6 427 70.5
Rhsim06G0176400 Rhododendron simsii HOM05D006015 ORTHO05D007816 8.0e-183 644.0 429 70.2
Psat6g109000 Pisum sativum HOM05D006015 ORTHO05D007816 1.0e-182 643.7 436 71.1
Cpa.g.sc136.28 Carica papaya HOM05D006015 ORTHO05D007816 1.8e-182 642.9 421 71.5
Atru.chr6.3393 Acer truncatum HOM05D006015 ORTHO05D007816 6.8e-182 641.0 429 71.1
ECA236G0403 Erigeron canadensis HOM05D006015 ORTHO05D007816 6.8e-182 641.0 428 69.9
Peaxi162Scf00802g00022 Petunia axillaris HOM05D006015 ORTHO05D007816 1.5e-181 639.8 432 69.0
Oeu064356.1 Olea europaea HOM05D006015 ORTHO05D007816 2.6e-181 639.0 426 70.7
MELO3C024194.2 Cucumis melo HOM05D006015 ORTHO05D007816 3.4e-181 638.6 428 70.1
Glyma.10G128800 Glycine max HOM05D006015 ORTHO05D007816 1.3e-180 636.7 428 71.0
Lalb_Chr03g0036841 Lupinus albus HOM05D006015 ORTHO05D007816 1.7e-180 636.3 435 68.5
Nitab4.5_0001867g0080 Nicotiana tabacum HOM05D006015 ORTHO05D007816 4.9e-180 634.8 429 69.2
TPR.G23976 Trifolium pratense HOM05D006015 ORTHO05D007816 8.3e-180 634.0 426 70.0
Aqoxy1G04250 Aquilegia oxysepala HOM05D006015 ORTHO05D007816 2.4e-179 632.5 432 68.5
Nitab4.5_0001701g0190 Nicotiana tabacum HOM05D006015 ORTHO05D007816 5.4e-179 631.3 421 70.5
TAR629G2010 Trochodendron aralioides HOM05D006015 ORTHO05D007816 5.4e-179 631.3 424 70.3
Lalb_Chr01g0011281 Lupinus albus HOM05D006015 ORTHO05D007816 1.2e-178 630.2 429 70.9
Lsat_1_v5_gn_7_96920 Lactuca sativa HOM05D006015 ORTHO05D007816 1.6e-178 629.8 427 67.7
Nn3g19725 Nelumbo nucifera HOM05D006015 ORTHO05D007816 2.7e-178 629.0 428 69.4
CsaV3_7G002510 Cucumis sativus L. HOM05D006015 ORTHO05D007816 3.5e-178 628.6 428 69.4
ClCG02G002870 Citrullus lanatus HOM05D006015 ORTHO05D007816 6.0e-178 627.9 429 69.2
DCAR_019683 Daucus carota HOM05D006015 ORTHO05D007816 1.0e-177 627.1 434 68.2
Gohir.A07G191800 Gossypium hirsutum HOM05D006015 ORTHO05D007816 1.3e-177 626.7 422 71.3
PGSC0003DMG400017397 Solanum tuberosum HOM05D006015 ORTHO05D007816 1.9e-176 622.9 423 68.8
MSTRG.10825 Avicennia marina HOM05D006015 ORTHO05D007816 2.5e-176 622.5 425 68.7
Sopen07g024010 Solanum pennellii HOM05D006015 ORTHO05D007816 4.3e-176 621.7 423 68.6
Sed0012767 Sechium edule HOM05D006015 ORTHO05D007816 5.6e-176 621.3 426 69.0
Solyc07g045470.3 Solanum lycopersicum HOM05D006015 ORTHO05D007816 3.6e-175 618.6 423 68.1
PSO302G0043 Papaver somniferum HOM05D006015 ORTHO05D007816 1.4e-174 616.7 426 67.6
CAN.G177.8 Capsicum annuum HOM05D006015 ORTHO05D007816 1.8e-174 616.3 423 68.6
Migut.K00073 Erythranthe guttata HOM05D006015 ORTHO05D007816 4.0e-174 615.1 424 67.9
AUR62029116 Chenopodium quinoa HOM05D006015 ORTHO05D007816 6.8e-174 614.4 422 67.3
Sed0014474 Sechium edule HOM05D006015 ORTHO05D007816 8.9e-174 614.0 424 67.7
Sc21g0000520 Simmondsia chinensis HOM05D006015 ORTHO05D007816 8.9e-174 614.0 425 67.5
PSO210G7679 Papaver somniferum HOM05D006015 ORTHO05D007816 2.6e-173 612.5 425 67.5
MBI16_g07770_MAGBIO Magnolia biondii HOM05D006015 ORTHO05D007816 3.4e-173 612.1 435 66.2
MSTRG.6445 Avicennia marina HOM05D006015 ORTHO05D007816 5.8e-173 611.3 429 68.8
Atru.BG.41.p Acer truncatum HOM05D006015 ORTHO05D007816 1.9e-171 606.3 355 77.2
THA.LOC104808847 Tarenaya hassleriana HOM05D006015 ORTHO05D007816 1.6e-170 603.2 434 65.9
Ah.01g002640 Amaranthus hybridus HOM05D006015 ORTHO05D007816 2.7e-170 602.4 394 71.6
SGA_v2.0_scaffold94G28455 Striga asiatica HOM05D003478 ORTHO05D004196 3.9e-169 598.6 430 67.2
unitig_37.g12711 Utricularia gibba HOM05D006015 ORTHO05D007816 4.3e-168 595.1 427 64.9
ATR0827G116 Amborella trichopoda HOM05D006015 ORTHO05D007816 9.5e-168 594.0 422 66.6
Thhalv10002538m.g Eutrema salsugineum HOM05D006015 ORTHO05D007816 3.6e-167 592.0 431 64.5
vmacro12084 Vaccinium macrocarpon HOM05D006015 ORTHO05D007816 1.1e-166 590.5 354 74.6
Hma1.2p1_0545F.1_g175930 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 6.8e-166 587.8 357 73.9
BcaB08g34500 Brassica carinata HOM05D006015 ORTHO05D007816 4.4e-165 585.1 427 64.4
Actinidia07868 Actinidia chinensis HOM05D006015 ORTHO05D007816 4.9e-164 581.6 425 66.4
BcaC01g03165 Brassica carinata HOM05D006015 ORTHO05D007816 4.9e-164 581.6 431 64.3
BolC3t17819H Brassica oleracea HOM05D006015 ORTHO05D007816 4.9e-164 581.6 431 64.3
Lj1P796T26 Lonicera japonica HOM05D006015 ORTHO05D007816 6.4e-164 581.3 333 77.5
Sp3g23770 Schrenkiella parvula HOM05D006015 ORTHO05D007816 1.2e-162 577.0 428 62.9
Lj8P135T89 Lonicera japonica HOM05D006015 ORTHO05D007816 2.1e-162 576.2 339 75.5
C03p55440 Brassica napus HOM05D006015 ORTHO05D007816 4.6e-162 575.1 427 64.2
Aa31LG8G11520 Aethionema arabicum HOM05D006015 ORTHO05D007816 2.3e-161 572.8 426 64.1
AL3G42830 Arabidopsis lyrata HOM05D006015 ORTHO05D007816 8.6e-161 570.9 428 62.9
AT2G05320 Arabidopsis thaliana HOM05D006015 ORTHO05D007816 8.6e-161 570.9 428 62.6
AUR62015007 Chenopodium quinoa HOM05D006015 ORTHO05D007816 2.5e-160 569.3 401 66.1
A03p44610 Brassica napus HOM05D006015 ORTHO05D007816 4.3e-160 568.5 426 63.4
BraA03t13594Z Brassica rapa HOM05D006015 ORTHO05D007816 7.3e-160 567.8 418 64.4
Carub.0003s2938 Capsella rubella HOM05D006015 ORTHO05D007816 1.2e-159 567.0 426 61.3
Os02g0798100 Oryza sativa ssp. japonica HOM05D006015 ORTHO05D007816 1.6e-159 566.6 425 61.2
CDE05G3376 Ceratophyllum demersum HOM05D006015 ORTHO05D007816 5.2e-158 561.6 421 62.7
Zm00001eb192260 Zea mays HOM05D006015 ORTHO05D007816 2.6e-157 559.3 363 66.9
Nn1g02851 Nelumbo nucifera HOM05D006015 ORTHO05D007816 2.9e-156 555.8 417 63.8
CARHR103100 Cardamine hirsuta HOM05D006015 ORTHO05D007816 3.8e-156 555.4 349 70.8
Migut.J01779 Erythranthe guttata HOM05D006015 ORTHO05D007816 6.4e-156 554.7 422 63.7
HPP92_001839 Vanilla planifolia HOM05D006015 ORTHO05D007816 4.2e-155 552.0 391 63.9
SEGI_05803 Sequoiadendron giganteum HOM05D006015 ORTHO05D007816 3.9e-153 545.4 393 63.9
SHI10157 Sapria himalayana HOM05D006015 ORTHO05D007816 1.5e-152 543.5 406 62.3
Prupe.3G198000 Prunus persica HOM05D006015 ORTHO05D007816 1.0e-145 520.8 281 80.4
Actinidia18833 Actinidia chinensis HOM05D006015 ORTHO05D007816 1.9e-144 516.5 425 60.2
Pp3c12_25130 Physcomitrium patens HOM05D006015 ORTHO05D007816 6.0e-138 495.0 359 63.2
Glyma.20G080200 Glycine max HOM05D006015 ORTHO05D007816 3.3e-136 489.2 290 74.8
SMO358G0350 Selaginella moellendorffii HOM05D006015 ORTHO05D007816 9.0e-134 481.1 349 61.9
Pp3c8_6700 Physcomitrium patens HOM05D006015 ORTHO05D007816 7.6e-133 478.0 359 60.7
Mapoly0086s0006 Marchantia polymorpha HOM05D006015 ORTHO05D007816 7.4e-128 461.5 362 60.2
SalBow1G4868 Salvia bowleyana HOM05D006015 ORTHO05D007816 3.0e-113 412.9 337 59.9
AagrBONN_evm.TU.Sc2ySwM_368.1590 Anthoceros agrestis HOM05D006015 ORTHO05D007816 8.2e-103 378.3 356 53.9
MSTRG.26113 Avicennia marina HOM05D006015 ORTHO05D007816 2.6e-101 373.2 209 77.5
SalBow6G1876 Salvia bowleyana HOM05D006015 ORTHO05D007816 1.7e-100 370.5 215 74.0
CBR_g52107 Chara braunii HOM05D006015 ORTHO05D000002 6.1e-98 362.1 309 56.3
Hma1.2p1_0545F.1_g175940 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 1.4e-94 350.9 209 73.2
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 6.4e-63 245.7 254 52.8
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 1.5e-56 224.6 396 38.1
Nn5g28971 Nelumbo nucifera HOM05D006015 ORTHO05D007816 6.6e-28 129.4 93 58.1
EL10Ac8g18725 Beta vulgaris HOM05D006015 ORTHO05D007816 1.5e-27 128.3 80 67.5
Actinidia35205 Actinidia chinensis HOM05D001060 ORTHO05D000905 3.8e-23 113.6 86 62.8
Aa31LG8G11540 Aethionema arabicum HOM05D006015 ORTHO05D007816 2.6e-16 90.9 152 36.8
Aa31LG8G11530 Aethionema arabicum HOM05D006015 ORTHO05D059074 5.5e-06 56.6 77 40.3


User provided reference genes

Program Settings