Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 0.0e+00 2325.4 1230 100.0
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 1.4e-216 757.7 1415 41.1
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 1.8e-211 740.7 1381 41.1
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 1.7e-209 734.2 1404 40.7
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 1.1e-208 731.5 1355 40.5
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.2e-207 728.0 1374 41.0
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 9.8e-202 708.4 1379 40.4
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.9e-201 706.8 1382 40.2
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.1e-200 704.9 1370 40.4
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 8.3e-193 678.7 1375 39.9
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 2.0e-191 674.1 1437 36.7
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 2.8e-188 663.7 1363 37.9
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 7.1e-184 649.0 1463 36.2
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 1.0e-182 645.2 1445 34.9
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 6.8e-179 632.5 1422 35.7
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 1.5e-170 604.7 1353 35.7
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 7.6e-170 602.4 1417 34.5
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 1.1e-165 588.6 1389 32.9
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 1.3e-164 585.1 1325 35.2
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 8.1e-164 582.4 1430 34.1
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 5.3e-163 579.7 1363 35.7
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.5e-154 551.6 1370 34.4
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 3.4e-154 550.4 1375 34.2
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 5.8e-154 549.7 1405 33.5
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.3e-153 548.5 1388 32.9
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 4.9e-153 546.6 1257 34.7
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 1.8e-150 538.1 1417 32.1
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 5.1e-150 536.6 1362 33.2
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 2.4e-147 527.7 1141 36.3
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 2.1e-143 514.6 1400 31.7
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 4.3e-141 506.9 1233 34.6
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 7.4e-141 506.1 1513 31.2
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 2.1e-140 504.6 1409 31.9
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 4.8e-140 503.4 1233 34.5
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 1.7e-137 495.0 1371 32.3
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 4.1e-131 473.8 1356 30.2
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 1.0e-126 459.1 1381 31.3
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.4e-126 458.8 1273 32.1
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.4e-126 458.8 1273 32.1
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 3.0e-126 457.6 1258 31.9
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 5.7e-125 453.4 1293 31.3
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.8e-123 448.4 1254 32.6
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 2.9e-121 441.0 1269 30.7
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 3.8e-121 440.7 1370 31.5
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 2.7e-119 434.5 1366 32.1
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 3.6e-119 434.1 1362 29.9
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 3.0e-118 431.0 1245 30.5
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 3.0e-118 431.0 1351 31.4
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 6.7e-118 429.9 1305 29.9
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 2.4e-115 421.4 1243 30.6
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 2.4e-115 421.4 1243 30.6
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 4.1e-115 420.6 1541 28.6
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 4.1e-115 420.6 1283 29.9
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 7.0e-115 419.9 1243 31.0
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.0e-114 418.3 1239 31.1
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 2.6e-114 417.9 1328 30.5
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 3.5e-114 417.5 1360 29.6
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 1.0e-113 416.0 1244 30.7
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 1.9e-112 411.8 540 44.1
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 3.2e-112 411.0 1311 29.8
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 1.2e-111 409.1 1343 29.8
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 2.7e-111 407.9 1311 29.7
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 4.7e-111 407.1 1249 29.9
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 1.4e-110 405.6 1363 29.5
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 4.0e-110 404.1 1240 30.5
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 9.7e-109 399.4 1365 29.7
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 4.8e-108 397.1 1364 28.7
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 6.3e-108 396.7 1349 29.7
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 1.1e-107 396.0 1249 31.1
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 9.1e-107 392.9 1234 29.0
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.5e-104 384.8 559 42.2
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 7.2e-104 383.3 1231 28.5
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 6.8e-102 376.7 559 41.5
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 1.2e-101 375.9 483 43.3
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 2.0e-101 375.2 1240 29.2
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 9.1e-99 366.3 1302 29.7
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.5e-96 359.0 1448 28.1
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 1.9e-96 358.6 501 42.5
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 1.3e-92 345.9 1441 26.7
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 2.2e-92 345.1 1233 30.6
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 6.3e-92 343.6 508 41.3
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.4e-91 342.4 1334 27.2
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 5.4e-91 340.5 1371 28.2
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 1.7e-89 335.5 1408 26.6
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 5.6e-88 330.5 1398 26.6
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 2.8e-87 328.2 491 39.7
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.5e-85 322.4 1143 28.6
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 7.5e-85 320.1 516 38.2
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 7.5e-85 320.1 512 38.1
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.4e-83 315.8 344 50.0
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 5.4e-83 313.9 1318 28.5
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 3.5e-82 311.2 1168 29.6
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.6e-79 302.4 581 33.7
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 2.9e-76 291.6 1270 28.1
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 6.4e-76 290.4 1588 26.7
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 2.7e-74 285.0 1326 26.6
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 8.9e-70 270.0 1121 26.7
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.0e-69 268.9 1331 26.4
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 1.3e-68 266.2 1305 26.8
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 3.2e-67 261.5 1250 26.0
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 1.6e-66 259.2 1264 26.4
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 3.3e-64 251.5 1241 27.5
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 4.4e-61 241.1 279 46.2
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 9.9e-61 240.0 434 41.0
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.4e-60 237.3 436 36.2
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 1.6e-55 222.6 505 33.3
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 9.0e-54 216.9 1235 24.9
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 4.4e-53 214.5 269 42.0
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 7.1e-51 207.2 319 39.2
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 6.6e-49 200.7 436 33.5
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 6.0e-42 177.6 152 56.6
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 7.4e-40 170.6 367 39.5
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.6e-39 169.5 264 43.9
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 2.8e-39 168.7 91 93.4
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.1e-38 166.8 356 39.6
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 4.0e-30 138.3 253 39.9
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 1.2e-29 136.7 146 46.6
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 6.5e-28 131.0 147 42.2
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 8.7e-25 120.6 133 53.4
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 1.9e-24 119.4 121 52.1
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 9.7e-24 117.1 272 37.1
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 2.4e-22 112.5 134 55.2
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 2.4e-22 112.5 134 55.2
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 1.5e-21 109.8 314 32.8
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 3.2e-19 102.1 160 41.2
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.5e-16 93.2 130 52.3
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.4e-14 85.9 129 48.1
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 5.3e-14 84.7 253 30.4
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 2.2e-12 79.3 268 32.8
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 3.2e-11 75.5 82 42.7
SEGI_34464 Sequoiadendron giganteum HOM05D005171 ORTHO05D030606 6.1e-10 71.2 152 25.7
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.0e-09 70.5 116 31.9
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 5.1e-09 68.2 79 41.8
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.0e-08 66.2 123 46.3
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 2.0e-08 66.2 70 52.9
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 2.0e-08 66.2 125 40.8
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.7e-07 63.2 102 34.3
A03p44260 Brassica napus HOM05D005171 ORTHO05D041371 3.7e-07 62.0 84 39.3
BraA03t13556Z Brassica rapa HOM05D005171 ORTHO05D041371 3.7e-07 62.0 84 39.3
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 3.7e-07 62.0 76 42.1
CDE02G3322 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 6.3e-07 61.2 113 38.1
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.4e-06 59.3 102 42.2


User provided reference genes

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