Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.0e-110 403.7 245 100.0
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.0e-105 387.1 273 89.4
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 4.8e-92 341.7 281 80.8
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 5.7e-69 265.0 157 77.7
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.8e-67 260.0 151 78.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 3.8e-65 252.3 151 77.5
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.5e-64 249.6 154 70.8
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 5.5e-64 248.4 151 75.5
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.2e-63 247.3 156 71.2
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.2e-63 247.3 152 73.7
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 4.7e-63 245.4 151 71.5
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.7e-63 245.4 152 73.7
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 8.0e-63 244.6 151 74.2
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.4e-62 243.8 158 69.0
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 3.0e-62 242.7 151 70.9
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.0e-62 242.7 151 73.5
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.0e-61 240.0 158 67.1
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.3e-60 237.3 151 72.2
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.7e-60 236.9 151 71.5
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 4.8e-60 235.3 158 66.5
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 6.3e-60 235.0 151 72.2
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 8.3e-60 234.6 151 71.5
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 8.3e-60 234.6 151 71.5
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 8.3e-60 234.6 151 70.2
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.1e-59 234.2 151 71.5
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.1e-59 234.2 154 69.5
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.4e-59 233.8 151 71.5
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.8e-59 233.4 151 71.5
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.8e-59 233.4 151 71.5
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.8e-59 233.4 151 71.5
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.8e-59 233.4 151 71.5
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 2.4e-59 233.0 151 69.5
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.4e-59 233.0 151 70.9
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.4e-59 233.0 151 70.9
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 5.4e-59 231.9 157 66.9
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 7.0e-59 231.5 154 69.5
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 7.0e-59 231.5 151 70.9
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 9.1e-59 231.1 151 69.5
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 9.1e-59 231.1 151 69.5
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.2e-58 230.7 151 70.2
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.2e-58 230.7 154 68.2
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 2.0e-58 229.9 151 67.5
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.7e-58 229.6 159 65.4
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 3.5e-58 229.2 151 71.5
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 5.9e-58 228.4 151 69.5
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 5.0e-57 225.3 151 68.9
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 1.1e-56 224.2 154 64.9
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 3.2e-56 222.6 158 67.1
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 3.2e-56 222.6 151 65.6
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 4.2e-56 222.2 151 67.5
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 5.5e-56 221.9 151 65.6
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 7.2e-56 221.5 147 69.4
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.2e-55 220.7 151 66.9
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.2e-55 220.7 151 66.9
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 1.6e-55 220.3 153 66.0
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 2.8e-55 219.5 150 65.3
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 4.7e-55 218.8 151 65.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 4.7e-55 218.8 160 64.4
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 6.1e-55 218.4 154 65.6
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 8.0e-55 218.0 158 65.2
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 8.0e-55 218.0 154 64.9
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.0e-55 218.0 152 63.8
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.4e-54 217.2 159 66.0
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 3.0e-54 216.1 154 64.9
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.0e-54 216.1 154 64.9
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 4.0e-54 215.7 154 64.9
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 5.2e-54 215.3 154 66.2
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 2.0e-53 213.4 158 63.9
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 3.4e-53 212.6 151 65.6
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 9.8e-53 211.1 151 64.9
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.7e-52 210.3 151 63.6
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.7e-52 210.3 151 62.3
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 2.2e-52 209.9 135 70.4
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 3.7e-52 209.1 151 66.9
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 4.9e-52 208.8 151 64.2
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 6.3e-52 208.4 151 60.3
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 8.3e-52 208.0 159 58.5
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.1e-51 207.6 149 64.4
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.1e-51 207.6 149 64.4
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.4e-51 206.5 151 58.9
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 5.4e-51 205.3 149 60.4
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.2e-50 204.1 149 59.7
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 4.5e-50 202.2 151 62.3
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.0e-49 201.1 143 67.1
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 1.9e-48 196.8 161 57.1
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.9e-48 196.8 134 66.4
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 5.6e-48 195.3 151 59.6
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-46 190.3 151 57.6
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-46 190.3 151 57.6
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.0e-46 189.5 151 57.6
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 6.8e-46 188.3 158 60.1
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 6.8e-46 188.3 151 57.6
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 6.8e-46 188.3 151 57.6
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 6.8e-46 188.3 151 57.6
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 6.8e-46 188.3 151 57.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 8.9e-46 188.0 155 60.0
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.5e-45 187.2 163 52.8
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 2.6e-45 186.4 143 60.8
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 9.8e-45 184.5 146 58.2
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.4e-43 179.9 148 57.4
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 9.2e-43 177.9 153 59.5
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 7.8e-42 174.9 153 56.9
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 7.8e-42 174.9 120 65.8
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.3e-41 173.3 120 66.7
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.9e-41 172.6 141 58.9
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 8.6e-41 171.4 120 64.2
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.3e-40 168.3 118 66.1
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.2e-39 167.5 119 67.2
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.6e-39 167.2 136 57.4
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.8e-38 163.7 133 56.4
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-38 163.7 151 51.7
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 6.8e-38 161.8 99 72.7
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 2.0e-37 160.2 132 54.5
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 3.4e-37 159.5 98 73.5
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.3e-36 157.5 104 67.3
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 4.9e-36 155.6 154 49.4
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 2.4e-35 153.3 151 49.0
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.6e-34 150.6 119 61.3
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 3.5e-34 149.4 107 59.8
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 3.0e-33 146.4 136 49.3
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.5e-32 144.1 151 45.7
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 1.9e-32 143.7 133 48.1
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 9.5e-32 141.4 151 49.0
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 9.5e-32 141.4 151 49.0
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 2.9e-28 129.8 133 44.4
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 3.7e-28 129.4 102 58.8
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.9e-27 127.1 99 59.6
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 2.7e-26 123.2 105 56.2
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 2.5e-24 116.7 120 52.5
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 6.2e-23 112.1 103 51.5
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.1e-22 111.3 70 71.4
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.4e-21 106.3 70 68.6
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 3.4e-21 106.3 140 43.6
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.3e-20 104.4 56 76.8
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.1e-18 97.1 77 61.0
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.9e-16 90.5 75 54.7
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 3.3e-16 89.7 60 68.3
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.8e-15 86.7 53 73.6
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.8e-14 84.0 54 70.4
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 1.5e-13 80.9 54 68.5
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.0e-13 80.5 77 51.9
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.6e-13 80.1 54 66.7
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 7.6e-13 78.6 52 65.4
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 9.9e-13 78.2 60 60.0
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 7.1e-11 72.0 51 64.7
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 9.3e-11 71.6 64 46.9
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 8.7e-09 65.1 55 61.8
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 3.3e-08 63.2 46 65.2
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 3.3e-08 63.2 33 78.8
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 1.4e-06 57.8 157 27.4
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 5.3e-06 55.8 55 45.5
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 6.9e-06 55.5 34 64.7


User provided reference genes

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