Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2355 Cannabis sativa HOM05D002924 ORTHO05D003122 1.1e-60 236.5 119 100.0
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.4e-15 86.7 83 59.0
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 3.9e-15 85.1 85 55.3
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 5.1e-15 84.7 109 44.0
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 6.7e-15 84.3 107 49.5
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 6.7e-15 84.3 107 49.5
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 6.7e-15 84.3 85 52.9
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.5e-14 83.2 83 56.6
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 2.5e-14 82.4 97 47.4
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 2.5e-14 82.4 84 56.0
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 3.3e-14 82.0 120 44.2
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 5.7e-14 81.3 107 48.6
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 5.7e-14 81.3 81 55.6
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 7.4e-14 80.9 84 56.0
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 9.7e-14 80.5 88 50.0
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 9.7e-14 80.5 93 49.5
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 9.7e-14 80.5 110 48.2
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 9.7e-14 80.5 107 46.7
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 9.7e-14 80.5 85 54.1
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 9.7e-14 80.5 86 54.7
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 2.2e-13 79.3 84 52.4
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.8e-13 79.0 82 52.4
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 3.7e-13 78.6 88 52.3
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 3.7e-13 78.6 93 50.5
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 3.7e-13 78.6 96 47.9
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 3.7e-13 78.6 86 51.2
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 6.3e-13 77.8 84 53.6
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 6.3e-13 77.8 93 47.3
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 6.3e-13 77.8 88 51.1
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 8.2e-13 77.4 86 52.3
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 1.1e-12 77.0 84 54.8
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 1.1e-12 77.0 88 52.3
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 1.1e-12 77.0 84 51.2
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 1.4e-12 76.6 97 50.5
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.4e-12 76.6 102 48.0
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.8e-12 76.3 83 51.8
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 1.8e-12 76.3 86 50.0
GSVIVG01021519001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.4e-12 75.9 81 50.6
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.1e-12 75.5 85 54.1
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.1e-12 75.5 98 46.9
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 3.1e-12 75.5 111 43.2
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 4.1e-12 75.1 95 48.4
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 4.1e-12 75.1 102 47.1
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 4.1e-12 75.1 111 42.3
Potri.011G083900 Populus trichocarpa HOM05D002924 ORTHO05D003122 4.1e-12 75.1 83 50.6
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 5.3e-12 74.7 84 56.0
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 6.9e-12 74.3 105 41.9
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 1.2e-11 73.6 101 45.5
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.2e-11 73.6 85 54.1
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 1.2e-11 73.6 84 52.4
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 1.2e-11 73.6 87 50.6
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 1.2e-11 73.6 86 53.5
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 1.5e-11 73.2 87 49.4
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 2.0e-11 72.8 87 48.3
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.0e-11 72.8 93 46.2
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 2.0e-11 72.8 92 51.1
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 2.6e-11 72.4 86 54.7
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 3.4e-11 72.0 84 53.6
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.4e-11 72.0 85 52.9
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 3.4e-11 72.0 84 48.8
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 4.5e-11 71.6 99 44.4
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 4.5e-11 71.6 88 52.3
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 4.5e-11 71.6 83 50.6
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 4.5e-11 71.6 86 48.8
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 4.5e-11 71.6 85 51.8
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 7.7e-11 70.9 95 47.4
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 7.7e-11 70.9 100 43.0
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 7.7e-11 70.9 88 43.2
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 1.0e-10 70.5 86 52.3
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 2.2e-10 69.3 89 43.8
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 2.2e-10 69.3 86 51.2
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 2.9e-10 68.9 90 46.7
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 2.9e-10 68.9 88 48.9
unitig_26.g9758 Utricularia gibba HOM05D002924 ORTHO05D003122 2.9e-10 68.9 88 47.7
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 2.9e-10 68.9 87 50.6
Psat1g194920 Pisum sativum HOM05D002924 ORTHO05D003122 3.8e-10 68.6 87 50.6
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 5.0e-10 68.2 83 47.0
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 5.0e-10 68.2 84 51.2
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 5.0e-10 68.2 96 45.8
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 5.0e-10 68.2 120 39.2
Psat1g195000 Pisum sativum HOM05D002924 ORTHO05D003122 5.0e-10 68.2 87 50.6
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 5.0e-10 68.2 87 46.0
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 8.5e-10 67.4 110 41.8
DCAR_003905 Daucus carota HOM05D002924 ORTHO05D003122 8.5e-10 67.4 91 44.0
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 1.1e-09 67.0 85 49.4
Lalb_Chr15g0086781 Lupinus albus HOM05D002924 ORTHO05D003122 1.1e-09 67.0 84 48.8
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 1.1e-09 67.0 88 45.5
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 1.4e-09 66.6 88 44.3
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.4e-09 66.6 84 46.4
Oeu031277.1 Olea europaea HOM05D002924 ORTHO05D003122 1.4e-09 66.6 93 40.9
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 1.9e-09 66.2 100 48.0
DCAR_007884 Daucus carota HOM05D002924 ORTHO05D003122 1.9e-09 66.2 92 44.6
FAN02G2253 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.9e-09 66.2 83 45.8
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 2.5e-09 65.9 84 48.8
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 2.5e-09 65.9 84 50.0
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 4.2e-09 65.1 89 43.8
FvH4_6g39780 Fragaria vesca HOM05D002924 ORTHO05D003122 4.2e-09 65.1 83 44.6
FAN14G1061 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.2e-09 65.1 83 44.6
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 5.5e-09 64.7 86 45.3
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 5.5e-09 64.7 84 45.2
Medtr8g107300 Medicago truncatula HOM05D002924 ORTHO05D003122 5.5e-09 64.7 95 43.2
RcHm_v2.0_Chr2g0153891 Rosa chinensis HOM05D002924 ORTHO05D003122 5.5e-09 64.7 87 42.5
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 5.5e-09 64.7 98 41.8
PGR004G2368 Punica granatum HOM05D002924 ORTHO05D003122 7.2e-09 64.3 108 41.7
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 9.4e-09 63.9 97 40.2
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.2e-08 63.5 99 46.5
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 1.2e-08 63.5 90 46.7
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.6e-08 63.2 84 45.2
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 1.6e-08 63.2 101 39.6
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 1.6e-08 63.2 87 47.1
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 1.6e-08 63.2 85 42.4
MELO3C001202.2 Cucumis melo HOM05D002924 ORTHO05D003122 2.1e-08 62.8 92 44.6
MELO3C016195.2 Cucumis melo HOM05D002924 ORTHO05D003122 2.1e-08 62.8 110 36.4
ClCG07G010850 Citrullus lanatus HOM05D002924 ORTHO05D003122 2.7e-08 62.4 114 38.6
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.7e-08 62.4 90 44.4
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 3.6e-08 62.0 93 39.8
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 3.6e-08 62.0 99 45.5
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.7e-08 61.6 99 44.4
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 4.7e-08 61.6 83 44.6
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 6.1e-08 61.2 84 47.6
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 7.9e-08 60.8 85 40.0
Cc02_g30950 Coffea canephora HOM05D002924 ORTHO05D003122 1.0e-07 60.5 92 41.3
Sed0027890 Sechium edule HOM05D002924 ORTHO05D003122 1.4e-07 60.1 110 34.5
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 1.8e-07 59.7 93 38.7
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 1.8e-07 59.7 93 38.7
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 1.8e-07 59.7 93 38.7
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 1.8e-07 59.7 93 38.7
Migut.M00900 Erythranthe guttata HOM05D002924 ORTHO05D003122 1.8e-07 59.7 102 39.2
HPP92_011075 Vanilla planifolia HOM05D002924 ORTHO05D003122 1.8e-07 59.7 84 42.9
BcaB07g32615 Brassica carinata HOM05D002924 ORTHO05D003122 2.3e-07 59.3 95 40.0
RcHm_v2.0_Chr5g0014391 Rosa chinensis HOM05D002924 ORTHO05D003122 2.3e-07 59.3 97 45.4
TPR.G36164 Trifolium pratense HOM05D002924 ORTHO05D003122 2.3e-07 59.3 94 42.6
arahy.Tifrunner.gnm1.ann1.IG3UT7 Arachis hypogaea HOM05D002924 ORTHO05D003122 3.0e-07 58.9 98 41.8
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 3.0e-07 58.9 86 41.9
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 3.0e-07 58.9 83 42.2
arahy.Tifrunner.gnm1.ann1.P4WXL8 Arachis hypogaea HOM05D002924 ORTHO05D003122 3.9e-07 58.5 104 38.5
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 3.9e-07 58.5 90 47.8
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 3.9e-07 58.5 96 41.7
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.9e-07 58.5 77 44.2
PGR031G1937 Punica granatum HOM05D002924 ORTHO05D003122 3.9e-07 58.5 98 34.7
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 5.1e-07 58.2 85 38.8
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 5.1e-07 58.2 93 40.9
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 5.1e-07 58.2 89 40.4
THA.LOC104814306 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 5.1e-07 58.2 113 37.2
BcaC01g00164 Brassica carinata HOM05D002924 ORTHO05D003122 6.7e-07 57.8 93 37.6
RcHm_v2.0_Chr5g0014381 Rosa chinensis HOM05D002924 ORTHO05D003122 6.7e-07 57.8 94 43.6
Solyc08g036660.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 6.7e-07 57.8 92 38.0
Sopen08g011410 Solanum pennellii HOM05D002924 ORTHO05D003122 6.7e-07 57.8 92 38.0
PGSC0003DMG400008782 Solanum tuberosum HOM05D002924 ORTHO05D003122 6.7e-07 57.8 92 38.0
arahy.Tifrunner.gnm1.ann1.A76KD4 Arachis hypogaea HOM05D002924 ORTHO05D003122 8.8e-07 57.4 103 36.9
CDE12G0054 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 1.1e-06 57.0 115 36.5
Peaxi162Scf00647g00010 Petunia axillaris HOM05D002924 ORTHO05D003122 1.1e-06 57.0 81 43.2
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 1.1e-06 57.0 94 38.3
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 1.5e-06 56.6 93 37.6
CDE01G0236 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 1.5e-06 56.6 85 44.7
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 2.0e-06 56.2 98 39.8
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 2.0e-06 56.2 97 38.1
SalBow4G2506 Salvia bowleyana HOM05D002924 ORTHO05D003122 2.6e-06 55.8 74 48.6
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 2.6e-06 55.8 84 42.9
CsaV3_4G007460 Cucumis sativus L. HOM05D002924 ORTHO05D003122 3.3e-06 55.5 109 33.0
Glyma.20G065500 Glycine max HOM05D011327 ORTHO05D013488 3.3e-06 55.5 87 42.5
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 3.3e-06 55.5 102 33.3
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 3.3e-06 55.5 94 39.4
SGA_v2.0_scaffold223G42810 Striga asiatica HOM05D002924 ORTHO05D003122 3.3e-06 55.5 96 35.4
BcaC05g27039 Brassica carinata HOM05D002924 ORTHO05D003122 4.4e-06 55.1 95 38.9
BolC5t31621H Brassica oleracea HOM05D002924 ORTHO05D003122 4.4e-06 55.1 95 38.9
C05p28990 Brassica napus HOM05D002924 ORTHO05D003122 5.7e-06 54.7 95 38.9
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 5.7e-06 54.7 91 47.3
Sed0018194 Sechium edule HOM05D002924 ORTHO05D028993 5.7e-06 54.7 107 40.2
Lj4g0026158 Lotus japonicus HOM05D002924 ORTHO05D003122 7.4e-06 54.3 91 41.8
Sed0002750 Sechium edule HOM05D002924 ORTHO05D003122 7.4e-06 54.3 109 33.9
Lj6g0025708 Lotus japonicus HOM05D011327 ORTHO05D013488 9.7e-06 53.9 99 39.4
Phvul.006G001900 Phaseolus vulgaris HOM05D011327 ORTHO05D013488 9.7e-06 53.9 104 37.5


User provided reference genes

Program Settings