Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 4.4e-161 571.2 288 100.0
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 4.1e-127 458.4 282 81.6
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 5.4e-127 458.0 277 82.3
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 5.4e-127 458.0 277 82.3
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 2.1e-126 456.1 277 81.9
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.3e-125 453.4 277 81.2
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.7e-125 453.0 260 85.8
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 1.1e-124 450.3 260 85.0
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 2.5e-124 449.1 273 81.7
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 7.3e-124 447.6 259 84.6
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 2.1e-123 446.0 273 81.7
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 2.8e-123 445.7 286 79.4
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 3.6e-123 445.3 257 85.6
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 4.7e-123 444.9 288 79.2
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 8.1e-123 444.1 281 80.4
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 8.1e-123 444.1 276 80.1
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.1e-122 443.7 280 80.7
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 1.8e-122 443.0 253 85.8
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 2.3e-122 442.6 260 83.8
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 2.3e-122 442.6 260 83.8
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 4.0e-122 441.8 243 87.2
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 2.6e-121 439.1 246 87.0
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 4.4e-121 438.3 260 82.7
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 4.4e-121 438.3 258 82.9
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 4.4e-121 438.3 288 76.4
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 5.8e-121 438.0 261 83.5
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 7.6e-121 437.6 252 85.3
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 9.9e-121 437.2 283 77.4
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.7e-120 436.4 261 83.5
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 2.9e-120 435.6 281 78.6
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 3.7e-120 435.3 286 77.6
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 4.9e-120 434.9 243 85.6
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 6.4e-120 434.5 261 83.5
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 8.4e-120 434.1 273 80.2
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 8.4e-120 434.1 273 80.2
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 8.4e-120 434.1 263 82.1
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.1e-119 433.7 246 86.2
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.9e-119 433.0 283 77.0
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 2.4e-119 432.6 278 77.7
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 2.4e-119 432.6 279 78.5
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 2.4e-119 432.6 239 87.0
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.2e-119 432.2 238 87.0
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 4.1e-119 431.8 281 76.5
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 5.4e-119 431.4 290 75.2
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 9.2e-119 430.6 285 77.2
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 1.2e-118 430.3 270 79.3
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 1.2e-118 430.3 270 79.3
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 6.0e-118 427.9 277 78.0
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 6.0e-118 427.9 254 83.5
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 7.8e-118 427.6 235 86.0
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.7e-117 426.4 279 76.7
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 1.7e-117 426.4 287 75.3
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 1.7e-117 426.4 281 76.2
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 5.1e-117 424.9 244 85.2
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 8.6e-117 424.1 250 80.8
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.1e-116 423.7 287 74.9
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 1.5e-116 423.3 257 80.9
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 1.9e-116 422.9 243 84.8
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.9e-116 422.9 249 83.1
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 5.6e-116 421.4 279 74.9
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 5.6e-116 421.4 244 83.2
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 2.1e-115 419.5 282 73.8
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 4.7e-115 418.3 248 82.7
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 4.7e-115 418.3 243 84.0
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.8e-114 416.4 235 83.0
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 3.1e-114 415.6 284 73.9
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 4.0e-114 415.2 284 74.3
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 5.2e-114 414.8 236 82.2
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 8.9e-114 414.1 283 73.9
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 8.9e-114 414.1 243 83.1
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 8.9e-114 414.1 278 73.4
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 2.0e-113 412.9 284 73.9
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 2.0e-113 412.9 284 73.9
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 4.4e-113 411.8 244 79.9
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.7e-112 409.8 251 79.3
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.2e-112 409.5 276 74.3
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 2.9e-112 409.1 266 75.9
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 2.9e-112 409.1 238 81.1
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 2.9e-112 409.1 243 78.2
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 4.9e-112 408.3 278 71.6
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.1e-111 407.1 285 72.6
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 1.4e-111 406.8 224 87.5
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.9e-111 406.4 257 77.0
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 3.2e-111 405.6 282 71.3
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 4.2e-111 405.2 401 57.1
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 1.3e-109 400.2 282 69.1
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.7e-109 399.8 288 70.1
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 3.9e-109 398.7 247 77.7
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 5.1e-109 398.3 244 79.5
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 1.1e-108 397.1 284 70.4
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.1e-108 397.1 255 74.1
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.5e-108 396.7 261 74.7
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.9e-108 396.4 284 69.7
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.5e-108 396.0 255 74.1
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 2.5e-108 396.0 243 79.4
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 9.6e-108 394.0 247 77.3
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 8.1e-107 391.0 294 71.1
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 8.1e-107 391.0 285 70.2
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 8.1e-107 391.0 287 69.0
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 1.1e-106 390.6 263 73.0
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.0e-105 386.3 245 77.6
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.4e-105 385.2 285 69.8
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.9e-103 379.8 238 76.9
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 5.4e-103 378.3 225 80.0
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.6e-102 375.2 228 78.1
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 6.6e-101 371.3 276 68.8
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 3.6e-99 365.5 249 72.7
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 1.9e-95 353.2 264 67.4
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 3.0e-93 345.9 277 65.3
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-92 344.0 191 87.4
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 1.5e-92 343.6 227 72.2
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.5e-92 342.8 247 69.6
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 2.5e-87 326.2 255 64.7
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.2e-86 323.9 238 65.1
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.6e-86 323.6 236 66.1
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 3.7e-83 312.4 180 85.0
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 4.8e-83 312.0 250 61.6
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 3.4e-81 305.8 287 58.2
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 5.9e-81 305.1 226 69.0
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.1e-79 300.8 235 61.3
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 2.3e-77 293.1 243 61.3
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 3.9e-77 292.4 189 74.6
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 3.4e-73 279.3 197 70.1
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.4e-69 267.3 282 53.2
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 2.4e-66 256.5 257 53.7
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.2e-65 254.2 230 57.0
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 6.3e-59 231.9 138 82.6
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.2e-57 227.6 216 54.6
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 3.5e-57 226.1 127 88.2
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 1.9e-55 220.3 252 48.4
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 3.2e-55 219.5 207 57.5
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.1e-47 194.5 126 77.8
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 1.9e-47 193.7 229 41.9
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.7e-43 180.6 111 76.6
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 1.2e-41 174.5 219 41.1
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.7e-40 170.6 220 40.5
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.0e-37 161.4 118 71.2
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 9.2e-34 148.3 87 81.6
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 4.5e-33 146.0 151 55.6
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 5.0e-32 142.5 87 73.6
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 7.3e-31 138.7 147 55.1
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 4.4e-28 129.4 106 66.0
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.3e-23 113.2 254 29.9
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 3.3e-23 113.2 95 63.2
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.8e-22 110.2 70 77.1
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.5e-15 87.8 50 80.0
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.5e-15 87.0 168 40.5
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.1e-13 81.6 86 51.2
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 5.8e-12 75.9 74 56.8
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.2e-11 73.9 72 58.3
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 1.3e-08 64.7 232 26.3
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.3e-08 63.9 174 28.7
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 3.3e-07 60.1 241 24.5
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 4.3e-07 59.7 229 26.6
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 5.6e-07 59.3 242 27.3
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 7.3e-07 58.9 221 30.8
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 7.3e-07 58.9 232 25.9
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 9.5e-07 58.5 27 96.3
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.2e-06 58.2 223 24.2
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 1.6e-06 57.8 238 27.3
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 3.6e-06 56.6 235 27.2
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 3.6e-06 56.6 206 30.1


User provided reference genes

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