Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 3.7e-29 131.0 70 100.0
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 3.8e-18 94.4 68 73.5
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 3.8e-18 94.4 68 73.5
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 3.8e-18 94.4 68 73.5
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 1.1e-17 92.8 68 72.1
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.1e-17 92.8 68 72.1
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 1.1e-17 92.8 68 73.5
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 2.5e-17 91.7 70 72.9
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 9.4e-17 89.7 68 66.2
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 9.4e-17 89.7 68 67.6
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 9.4e-17 89.7 68 70.6
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 2.1e-16 88.6 68 66.2
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 2.7e-16 88.2 68 76.5
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 3.6e-16 87.8 68 75.0
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 4.7e-16 87.4 68 67.6
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 4.7e-16 87.4 68 67.6
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 4.7e-16 87.4 68 64.7
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 6.1e-16 87.0 68 70.6
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 8.0e-16 86.7 70 68.6
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 8.0e-16 86.7 69 66.7
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 1.0e-15 86.3 68 63.2
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 1.0e-15 86.3 68 66.2
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 1.0e-15 86.3 69 69.6
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 1.0e-15 86.3 68 63.2
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 1.0e-15 86.3 69 66.7
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 1.4e-15 85.9 62 66.1
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 1.4e-15 85.9 62 66.1
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 1.4e-15 85.9 68 67.6
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 1.4e-15 85.9 70 65.7
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 2.3e-15 85.1 68 63.2
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 2.3e-15 85.1 68 66.2
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 3.0e-15 84.7 68 61.8
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 6.7e-15 83.6 70 64.3
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 6.7e-15 83.6 67 70.1
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 8.8e-15 83.2 68 66.2
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 8.8e-15 83.2 68 63.2
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 1.5e-14 82.4 68 64.7
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 1.5e-14 82.4 68 64.7
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 1.5e-14 82.4 68 69.1
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 2.6e-14 81.6 67 68.7
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 4.4e-14 80.9 68 66.2
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 5.7e-14 80.5 68 63.2
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 5.7e-14 80.5 66 60.6
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 5.7e-14 80.5 68 61.8
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 7.4e-14 80.1 70 64.3
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 7.4e-14 80.1 68 69.1
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 9.7e-14 79.7 70 62.9
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 1.3e-13 79.3 68 66.2
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 1.7e-13 79.0 69 65.2
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 1.7e-13 79.0 70 64.3
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 2.2e-13 78.6 68 58.8
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 3.7e-13 77.8 68 60.3
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 8.2e-13 76.6 67 61.2
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 8.2e-13 76.6 67 62.7
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 8.2e-13 76.6 66 65.2
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 1.1e-12 76.3 68 57.4
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 1.4e-12 75.9 67 65.7
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 1.4e-12 75.9 67 65.7
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 1.8e-12 75.5 67 62.7
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 2.4e-12 75.1 70 61.4
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 2.4e-12 75.1 66 59.1
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 3.1e-12 74.7 67 59.7
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 3.1e-12 74.7 69 59.4
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 4.1e-12 74.3 66 56.1
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 5.3e-12 73.9 68 63.2
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 5.3e-12 73.9 66 65.2
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 9.1e-12 73.2 67 58.2
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 1.6e-11 72.4 67 58.2
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 1.6e-11 72.4 67 58.2
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 1.6e-11 72.4 67 58.2
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 1.6e-11 72.4 67 58.2
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 1.6e-11 72.4 67 58.2
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 1.6e-11 72.4 68 55.9
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 3.5e-11 71.2 60 65.0
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 3.5e-11 71.2 66 57.6
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 1.0e-10 69.7 67 55.2
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 1.3e-10 69.3 66 54.5
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 1.7e-10 68.9 69 56.5
AagrBONN_evm.TU.Sc2ySwM_228.5835 Anthoceros agrestis HOM05D007805 ORTHO05D009877 1.9e-09 65.5 68 55.9
unitig_899.g15287 Utricularia gibba HOM05D007805 ORTHO05D009877 1.6e-08 62.4 65 50.8
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 1.4e-07 59.3 72 48.6
Hund18262 Selenicereus undatus HOM05D007805 ORTHO05D009877 1.5e-06 55.8 42 64.3
Pp3c13_11150 Physcomitrium patens HOM05D007805 ORTHO05D009877 7.5e-06 53.5 66 47.0


User provided reference genes

Program Settings