Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 3.5e-219 764.6 376 100.0
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.5e-185 652.9 378 82.8
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 3.3e-185 651.7 378 82.8
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 7.4e-185 650.6 378 83.1
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.3e-181 639.8 378 81.7
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.4e-180 636.3 376 81.4
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 4.2e-180 634.8 376 81.4
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 4.2e-180 634.8 375 80.5
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 2.7e-179 632.1 347 86.2
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 3.6e-179 631.7 385 79.0
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 4.7e-179 631.3 373 80.2
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 2.3e-178 629.0 378 79.4
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 5.1e-178 627.9 381 79.8
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 5.1e-178 627.9 365 81.9
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 5.1e-178 627.9 347 85.9
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 8.8e-178 627.1 375 81.3
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.1e-177 626.7 375 80.3
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.5e-177 626.3 375 81.3
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.5e-177 626.3 375 81.3
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 1.5e-177 626.3 375 81.3
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 2.0e-177 625.9 384 78.9
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 2.6e-177 625.5 358 84.1
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 3.3e-177 625.2 344 86.6
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 5.7e-177 624.4 369 79.9
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 7.4e-177 624.0 375 79.7
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 9.7e-177 623.6 365 80.8
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 2.2e-176 622.5 374 79.4
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 2.2e-176 622.5 345 85.2
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 2.8e-176 622.1 375 79.5
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 1.1e-175 620.2 376 78.7
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 1.8e-175 619.4 376 79.8
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 3.1e-175 618.6 382 78.5
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 3.1e-175 618.6 378 79.1
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 9.1e-175 617.1 378 79.1
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.2e-174 616.7 345 84.9
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 1.2e-174 616.7 372 78.8
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-174 616.3 365 80.0
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 2.0e-174 615.9 374 79.1
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.6e-174 615.5 357 82.4
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 3.5e-174 615.1 376 77.7
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 4.5e-174 614.8 370 79.2
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 4.5e-174 614.8 392 77.6
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 5.9e-174 614.4 381 76.9
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 5.9e-174 614.4 382 78.0
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 5.9e-174 614.4 344 83.7
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 7.7e-174 614.0 376 78.5
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.0e-173 613.6 341 85.6
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 1.3e-173 613.2 347 83.9
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.7e-173 612.8 342 84.2
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 1.7e-173 612.8 344 84.9
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 1.7e-173 612.8 378 77.8
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 2.9e-173 612.1 345 84.6
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 2.9e-173 612.1 342 85.4
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 2.9e-173 612.1 376 76.9
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 3.8e-173 611.7 341 83.6
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 8.5e-173 610.5 379 78.4
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 8.5e-173 610.5 341 83.9
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.1e-172 610.1 355 82.5
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.9e-172 609.4 344 84.6
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 2.5e-172 609.0 374 78.1
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.5e-172 609.0 347 83.3
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 3.2e-172 608.6 357 80.7
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 4.2e-172 608.2 351 81.5
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 7.2e-172 607.4 356 81.7
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 1.6e-171 606.3 342 83.6
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 2.1e-171 605.9 345 82.6
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 8.0e-171 604.0 343 83.4
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 1.0e-170 603.6 386 75.9
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 1.0e-170 603.6 375 77.1
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.0e-170 603.6 343 84.3
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.8e-170 602.8 356 81.2
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 1.8e-170 602.8 345 82.9
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 2.3e-170 602.4 343 83.1
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 3.9e-170 601.7 341 81.8
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 5.2e-170 601.3 347 83.0
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 8.8e-170 600.5 342 82.5
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 8.8e-170 600.5 342 83.0
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.5e-169 599.7 344 82.3
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 2.6e-169 599.0 345 82.0
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 2.6e-169 599.0 375 76.3
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 3.3e-169 598.6 374 76.5
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 9.7e-169 597.0 360 79.7
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 2.2e-168 595.9 349 81.7
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 3.7e-168 595.1 344 81.7
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.2e-168 594.0 405 71.6
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 1.1e-167 593.6 356 80.3
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 2.4e-167 592.4 367 77.9
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.4e-167 592.4 343 82.2
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.6e-166 589.7 392 75.0
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 2.6e-166 589.0 344 80.8
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 2.6e-166 589.0 389 75.8
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 5.9e-166 587.8 358 79.3
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 6.5e-165 584.3 346 80.1
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 1.9e-164 582.8 341 79.5
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 4.7e-163 578.2 347 80.1
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 5.2e-162 574.7 445 66.3
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 2.6e-161 572.4 344 79.1
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 1.7e-160 569.7 343 79.0
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 2.4e-159 565.8 476 62.0
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 9.4e-156 553.9 385 70.1
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 1.5e-153 546.6 363 73.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.2e-150 537.0 354 73.2
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 3.5e-150 535.4 344 72.1
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.3e-149 533.5 310 82.9
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 1.4e-146 523.5 354 73.2
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 8.3e-144 514.2 354 68.6
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 1.0e-141 507.3 341 71.8
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.8e-138 496.5 339 69.9
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 4.4e-137 491.9 375 66.7
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 9.2e-135 484.2 276 83.7
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 4.4e-129 465.3 329 66.6
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.9e-124 449.9 258 81.8
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.3e-124 449.1 255 83.1
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 8.9e-122 441.0 339 62.5
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 1.7e-120 436.8 402 58.0
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 8.4e-120 434.5 312 70.5
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.9e-119 433.3 312 70.2
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 2.0e-113 413.3 231 81.8
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 3.2e-111 406.0 228 85.1
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 2.5e-108 396.4 340 56.2
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.6e-107 393.7 387 56.6
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.9e-106 388.3 355 58.9
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 1.6e-99 367.1 245 71.4
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 4.8e-99 365.5 220 82.7
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 2.2e-96 356.7 344 53.2
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 6.4e-96 355.1 339 53.7
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 2.8e-91 339.7 254 67.7
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 2.9e-88 329.7 190 82.6
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 3.5e-78 296.2 170 81.8
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 8.7e-77 291.6 220 68.2
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 1.7e-64 250.8 165 75.8
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 9.4e-63 245.0 151 76.8
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 8.2e-51 205.3 115 80.9
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 4.5e-49 199.5 340 37.6
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.9e-48 196.8 112 78.6
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 2.7e-41 173.7 94 86.2
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 7.7e-41 172.2 99 80.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.1e-39 168.3 248 43.5
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 9.8e-36 155.2 354 33.6
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 1.0e-24 118.6 81 76.5
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.8e-21 107.8 95 55.8
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 1.5e-20 104.8 270 32.2
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 2.2e-19 100.9 87 59.8
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.7e-19 100.1 178 38.8
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 3.1e-13 80.5 45 82.2
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.9e-10 71.2 42 71.4


User provided reference genes

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