Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 3.0e-131 471.9 238 100.0
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.6e-79 300.1 234 66.7
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.6e-76 288.9 233 67.0
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.3e-75 286.2 234 65.8
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.0e-75 285.8 233 64.4
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 3.0e-75 285.8 234 64.1
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 4.0e-75 285.4 236 63.1
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 5.2e-75 285.0 233 63.5
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 5.7e-74 281.6 232 63.8
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.2e-73 279.6 232 63.4
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 2.2e-73 279.6 234 62.4
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.1e-72 277.3 235 63.8
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.4e-72 276.9 230 66.5
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 2.4e-72 276.2 234 62.8
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 5.4e-72 275.0 235 62.1
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.2e-71 273.9 231 61.5
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 1.6e-71 273.5 233 62.2
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.7e-71 272.7 231 61.9
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.7e-71 272.7 227 63.4
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 7.7e-71 271.2 231 62.8
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.3e-70 270.4 233 62.7
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.3e-70 269.6 206 67.5
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 5.0e-70 268.5 233 62.2
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 1.5e-69 266.9 237 58.6
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.5e-69 266.9 231 63.2
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.9e-69 266.5 232 61.2
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 2.5e-69 266.2 235 61.7
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 4.2e-69 265.4 232 62.1
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 4.2e-69 265.4 239 62.3
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 4.2e-69 265.4 237 58.6
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.2e-68 263.8 237 62.9
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 1.2e-68 263.8 232 60.8
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.6e-68 263.5 229 61.6
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 1.6e-68 263.5 237 58.2
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.1e-68 263.1 231 61.9
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 2.1e-68 263.1 229 61.6
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 2.1e-68 263.1 231 61.9
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 2.8e-68 262.7 237 58.2
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 3.6e-68 262.3 233 61.4
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 4.7e-68 261.9 231 62.3
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 6.1e-68 261.5 239 60.3
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 8.0e-68 261.2 237 61.6
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.0e-67 260.8 220 63.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.8e-67 260.0 238 61.3
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 2.3e-67 259.6 232 59.1
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.0e-67 258.8 232 59.5
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 4.0e-67 258.8 232 59.5
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 4.0e-67 258.8 232 60.8
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.0e-67 258.8 233 60.9
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.9e-67 257.7 232 61.2
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 8.9e-67 257.7 236 58.9
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.5e-66 256.9 178 71.9
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 2.0e-66 256.5 236 58.9
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.4e-66 255.8 232 59.5
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 5.7e-66 255.0 233 60.1
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 5.7e-66 255.0 234 59.4
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.3e-65 253.8 232 60.8
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 1.7e-65 253.4 234 59.4
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.7e-65 253.4 232 58.2
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 2.2e-65 253.1 283 54.1
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 3.7e-65 252.3 239 57.7
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.1e-64 250.8 261 55.6
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 1.1e-64 250.8 237 61.2
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.4e-64 250.4 234 59.8
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 1.8e-64 250.0 232 58.2
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 2.4e-64 249.6 234 59.4
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 3.1e-64 249.2 241 58.9
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.1e-64 248.8 233 60.9
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-63 247.3 232 59.5
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 4.5e-63 245.4 186 65.6
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 5.9e-63 245.0 229 59.0
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 7.8e-63 244.6 239 54.8
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 7.8e-63 244.6 238 58.8
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.3e-62 243.0 236 59.7
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 2.3e-62 243.0 199 61.3
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 2.9e-62 242.7 234 57.3
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 3.8e-62 242.3 220 60.5
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-61 240.7 181 67.4
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.1e-61 240.7 215 60.5
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 1.5e-61 240.4 236 57.6
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 1.5e-61 240.4 205 62.4
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 5.6e-61 238.4 185 64.3
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 9.5e-61 237.7 230 58.3
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.8e-60 236.1 224 59.4
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 8.0e-60 234.6 251 52.6
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 1.0e-59 234.2 235 56.2
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.4e-59 233.8 235 54.5
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.4e-59 233.8 240 57.1
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 1.8e-59 233.4 233 56.2
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 6.8e-59 231.5 233 57.5
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 8.9e-59 231.1 221 58.4
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 1.2e-58 230.7 175 65.7
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 3.4e-58 229.2 238 56.7
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 3.4e-58 229.2 235 57.4
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 5.8e-58 228.4 235 56.6
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 7.5e-58 228.0 230 58.3
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.2e-57 226.5 235 56.2
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 2.2e-57 226.5 235 56.2
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 2.2e-57 226.5 232 52.6
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 6.4e-57 224.9 203 58.1
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 8.3e-57 224.6 234 54.7
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 1.1e-56 224.2 212 57.5
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.4e-56 223.8 230 55.7
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.4e-56 223.8 162 71.0
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 1.9e-56 223.4 228 54.4
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.9e-56 223.4 231 52.8
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.9e-56 223.4 236 53.4
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 4.1e-56 222.2 231 55.8
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 4.1e-56 222.2 232 55.6
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 5.4e-56 221.9 205 59.0
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 5.4e-56 221.9 259 53.7
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 7.0e-56 221.5 231 56.7
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 9.2e-56 221.1 180 66.7
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 9.2e-56 221.1 236 55.9
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 9.2e-56 221.1 234 55.1
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.6e-55 220.3 233 55.4
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 6.0e-55 218.4 224 58.0
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.0e-54 217.6 236 55.5
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 2.3e-54 216.5 235 54.5
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 3.0e-54 216.1 233 53.2
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 3.0e-54 216.1 233 53.2
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 6.6e-54 214.9 203 57.6
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 9.5e-53 211.1 215 56.3
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.2e-52 210.7 154 70.1
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.2e-52 210.7 232 50.4
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.2e-52 210.7 232 50.4
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.4e-51 207.2 214 56.1
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 5.8e-50 201.8 238 51.3
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 1.4e-48 197.2 161 65.8
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.7e-47 193.0 236 50.4
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 6.0e-47 191.8 136 71.3
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.7e-46 190.3 234 47.9
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.7e-46 190.3 232 50.0
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.1e-45 187.6 231 50.2
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 4.3e-45 185.7 234 47.0
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.8e-44 183.0 128 71.1
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.0e-42 176.8 165 60.6
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.7e-38 163.7 169 54.4
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 2.1e-36 156.8 105 75.2
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 3.6e-36 156.0 101 79.2
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.8e-33 146.0 152 52.0
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 7.1e-32 141.7 172 51.7
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.2e-31 141.0 130 60.0
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.7e-31 139.8 165 50.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 4.6e-31 139.0 136 58.8
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.7e-30 137.1 98 65.3
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 9.6e-29 131.3 123 59.3
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.1e-28 128.3 158 48.7
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.2e-23 114.4 82 69.5
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.8e-20 103.2 71 74.6
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.2e-16 89.4 65 66.2
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 9.3e-16 88.2 97 55.7
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 9.3e-16 88.2 97 55.7
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.6e-15 87.4 64 70.3
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 4.3e-13 79.3 136 33.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 5.6e-13 79.0 103 41.7
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 2.0e-10 70.5 104 37.5


User provided reference genes

Program Settings