Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 1.3e-238 829.3 422 100.0
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 2.4e-232 808.5 425 97.4
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 4.4e-162 575.1 431 70.5
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 1.7e-161 573.2 423 70.0
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 1.7e-158 563.1 413 72.2
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 2.1e-156 556.2 400 72.8
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 2.8e-156 555.8 427 67.7
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 5.3e-155 551.6 424 67.7
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 1.7e-153 546.6 425 68.2
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 6.4e-153 544.7 427 67.4
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 9.3e-152 540.8 420 69.0
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 1.8e-147 526.6 410 68.8
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 2.4e-147 526.2 427 66.7
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 3.1e-147 525.8 362 74.0
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 3.4e-146 522.3 427 64.9
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 3.8e-145 518.8 371 72.0
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.4e-144 516.2 426 65.3
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 3.2e-144 515.8 389 69.4
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 5.5e-144 515.0 354 73.7
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 7.1e-144 514.6 350 74.3
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 7.1e-144 514.6 362 73.8
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 9.3e-144 514.2 470 59.4
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 9.3e-144 514.2 354 74.3
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 1.6e-143 513.5 353 74.5
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 4.6e-143 511.9 354 74.3
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 1.3e-142 510.4 354 72.9
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 2.3e-142 509.6 360 71.9
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 3.9e-142 508.8 353 73.7
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 3.9e-142 508.8 400 67.2
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 5.1e-142 508.4 365 71.8
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 6.7e-142 508.1 354 74.0
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 1.5e-141 506.9 361 72.0
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 4.3e-141 505.4 395 66.6
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.6e-140 503.4 362 72.1
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.6e-140 503.4 427 64.4
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 2.8e-140 502.7 370 70.0
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 2.8e-140 502.7 359 70.5
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.1e-139 500.7 354 70.9
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 1.1e-139 500.7 354 71.8
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 1.1e-139 500.7 424 63.2
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 1.4e-139 500.4 405 65.2
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 3.1e-139 499.2 363 70.2
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 1.5e-138 496.9 436 60.6
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 3.4e-138 495.7 424 64.2
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 4.5e-138 495.4 387 65.6
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 5.8e-138 495.0 461 60.3
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 1.0e-137 494.2 355 72.4
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 1.7e-137 493.4 342 73.1
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 6.5e-137 491.5 355 69.9
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 1.1e-136 490.7 390 66.4
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 1.4e-136 490.3 359 69.9
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 4.2e-136 488.8 364 69.0
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.2e-135 487.3 341 72.1
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 1.2e-135 487.3 410 61.2
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 2.1e-135 486.5 403 63.3
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 6.0e-135 485.0 355 68.5
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 6.0e-135 485.0 355 68.5
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 7.9e-135 484.6 351 70.7
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 7.9e-135 484.6 356 69.1
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 7.9e-135 484.6 404 63.9
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 7.9e-135 484.6 410 62.0
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 1.3e-134 483.8 363 68.9
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 3.9e-134 482.3 355 68.2
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 3.9e-134 482.3 358 68.2
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 8.7e-134 481.1 355 67.9
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 1.1e-133 480.7 354 70.3
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 3.3e-133 479.2 355 67.6
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 5.7e-133 478.4 363 68.6
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 7.4e-133 478.0 360 68.3
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 7.4e-133 478.0 348 69.8
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 2.2e-132 476.5 361 67.6
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 3.7e-132 475.7 382 66.5
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 8.2e-132 474.6 361 67.3
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 1.4e-131 473.8 355 67.3
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 1.8e-131 473.4 360 70.0
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.2e-130 470.7 361 68.1
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 4.5e-130 468.8 361 66.5
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 5.9e-130 468.4 346 70.5
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 5.5e-128 461.8 433 59.1
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 7.2e-128 461.5 410 61.7
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 4.6e-127 458.8 433 58.2
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.9e-125 453.4 354 65.3
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 7.4e-125 451.4 361 65.1
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 1.3e-124 450.7 310 73.5
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 1.8e-123 446.8 362 64.9
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 4.1e-123 445.7 357 66.4
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 4.1e-123 445.7 353 65.2
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.3e-121 440.7 309 72.5
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 2.2e-121 439.9 399 61.4
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 7.2e-120 434.9 312 70.2
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 9.1e-115 417.9 313 69.3
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 2.6e-114 416.4 271 74.2
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 2.9e-113 412.9 317 65.9
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 3.3e-109 399.4 354 57.6
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.5e-104 384.0 353 54.7
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 5.2e-102 375.6 358 54.7
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 1.0e-94 351.3 346 53.2
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 8.3e-84 315.1 252 59.9
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 5.9e-82 308.9 265 58.5
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 5.9e-82 308.9 463 47.1
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 8.6e-81 305.1 186 83.3
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 6.8e-78 295.4 397 42.6
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 1.2e-77 294.7 258 63.6
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 5.0e-73 279.3 362 46.1
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 2.9e-68 263.5 180 73.9
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 8.3e-68 261.9 183 68.9
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.8e-63 246.9 423 35.9
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.8e-63 246.9 423 35.9
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 4.7e-63 246.1 251 52.6
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 8.3e-60 235.3 411 35.0
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 2.0e-53 214.2 343 42.0
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 7.8e-50 202.2 517 28.6
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 1.7e-49 201.1 161 65.8
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 8.4e-44 182.2 357 37.5
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 5.8e-37 159.5 130 58.5
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 2.1e-31 141.0 153 48.4
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 1.2e-18 98.6 71 66.2
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 2.3e-17 94.4 70 68.6
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 3.1e-14 84.0 68 67.6
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.1e-14 84.0 171 31.6
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 4.1e-14 83.6 171 31.6
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 5.3e-14 83.2 61 55.7
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 1.2e-13 82.0 70 64.3
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.6e-13 80.9 179 30.7
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.0e-12 76.6 169 33.7
MD15G1234700 Malus domestica HOM05D006074 ORTHO05D248841 1.6e-10 71.6 58 55.2
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 4.6e-10 70.1 51 70.6


User provided reference genes

Program Settings