Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 3.7e-135 485.0 260 100.0
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.9e-123 446.0 262 90.5
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 4.3e-123 444.9 262 90.1
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 4.3e-123 444.9 262 90.1
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 89.3
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 89.7
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 89.3
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 89.3
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 88.9
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.3e-121 439.1 262 88.2
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 88.5
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 5.2e-121 438.0 262 87.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 6.8e-121 437.6 262 88.9
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 8.9e-121 437.2 262 87.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 8.9e-121 437.2 262 87.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 8.9e-121 437.2 262 87.8
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 8.9e-121 437.2 262 88.2
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 8.9e-121 437.2 261 90.0
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 88.5
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 87.4
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 88.2
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 88.2
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 87.4
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 88.2
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 88.2
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 88.2
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.8e-120 433.7 262 86.6
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 9.8e-120 433.7 262 86.6
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.8e-120 433.7 262 87.8
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 88.2
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 86.3
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.7e-119 431.8 262 87.0
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.7e-119 431.8 262 87.4
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 87.0
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 6.4e-119 431.0 261 87.4
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.3e-119 430.6 262 86.6
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 86.3
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 86.3
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 87.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 86.3
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 87.4
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 4.1e-118 428.3 262 87.4
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 86.6
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 86.6
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 9.2e-118 427.2 262 87.0
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 9.2e-118 427.2 260 85.4
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 9.2e-118 427.2 260 85.4
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.2e-117 426.8 262 86.6
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 2.7e-117 425.6 245 91.8
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 2.7e-117 425.6 245 91.4
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 86.6
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 86.6
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 6.0e-117 424.5 258 87.2
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 7.8e-117 424.1 263 86.3
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 7.8e-117 424.1 261 85.1
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.5
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 85.5
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 86.3
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.7e-116 422.9 261 83.9
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 2.3e-116 422.5 263 85.9
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.9
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 85.1
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.9e-116 421.8 261 84.3
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 85.1
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 5.1e-116 421.4 263 85.9
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.4
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 5.1e-116 421.4 264 86.0
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.7
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 8.6e-116 420.6 262 84.4
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 8.6e-116 420.6 262 84.7
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 8.6e-116 420.6 262 85.1
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 85.5
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.9e-115 419.5 262 85.9
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.9e-115 419.5 262 85.1
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 84.4
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 85.1
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 85.5
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 7.3e-115 417.5 261 84.3
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.2e-114 416.8 261 83.1
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.2e-114 416.8 262 83.6
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.6e-114 415.2 262 84.4
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 4.7e-114 414.8 262 82.8
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 6.2e-114 414.5 264 84.8
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 8.1e-114 414.1 261 84.7
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 81.3
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 83.2
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-113 412.9 263 83.7
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 82.4
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 4.0e-113 411.8 250 84.4
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 6.8e-113 411.0 262 82.1
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.2e-112 410.2 264 82.6
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.5e-112 409.8 239 89.5
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 4.4e-112 408.3 261 82.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 7.6e-112 407.5 261 82.0
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 9.9e-112 407.1 261 82.0
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 2.9e-111 405.6 263 81.7
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 4.1e-110 401.7 261 81.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 81.3
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 2.1e-109 399.4 262 81.3
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.7e-109 399.1 263 81.0
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.7e-109 399.1 263 81.0
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.7e-109 399.1 263 81.0
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 3.5e-109 398.7 246 85.8
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 82.1
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 82.1
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 80.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 7.8e-109 397.5 263 81.0
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 80.9
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 80.9
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 80.9
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 80.9
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 80.9
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 80.9
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 80.9
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.7e-108 396.4 262 80.9
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.7e-108 396.4 262 80.9
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 80.5
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 80.5
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 80.5
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 80.5
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 6.6e-108 394.4 262 80.2
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.8
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 7.3e-107 391.0 262 79.0
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.4e-105 386.7 261 79.3
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 3.1e-105 385.6 270 77.0
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 8.9e-105 384.0 261 78.9
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.5e-104 383.3 270 76.3
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 7.6e-104 380.9 263 79.1
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.4e-102 376.7 262 79.4
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 6.0e-101 371.3 261 79.3
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 2.3e-100 369.4 248 79.8
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 6.6e-100 367.9 264 76.5
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.8e-98 361.7 262 75.6
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.4e-97 360.1 262 76.0
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 9.0e-97 357.5 210 88.6
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.2e-96 357.1 241 80.1
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.2e-96 357.1 249 75.1
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.2e-95 352.8 261 70.1
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.4e-95 350.9 234 78.2
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 4.2e-94 348.6 231 77.1
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.7e-93 345.9 214 85.5
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.0e-92 344.0 223 77.1
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.8e-92 343.2 261 68.2
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 3.1e-89 332.4 219 77.6
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.5e-88 330.1 262 70.2
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 4.0e-81 305.4 218 71.1
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.0e-80 303.1 231 64.9
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.4e-80 302.4 267 62.2
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.2e-79 299.7 253 68.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.8e-76 290.0 250 66.0
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.5e-75 287.0 204 76.5
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 9.7e-75 284.3 208 69.7
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.8e-74 282.7 247 66.0
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 9.0e-73 277.7 263 62.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.2e-69 267.3 262 62.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 4.6e-69 265.4 268 55.6
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 9.1e-65 251.1 209 62.7
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.6e-61 240.4 240 61.7
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 4.1e-57 225.7 242 50.8
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.4e-54 217.2 130 81.5
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 7.9e-53 211.5 120 90.0
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.7e-52 208.4 244 50.0
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 8.2e-50 201.4 138 79.0
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 5.0e-47 192.2 179 61.5
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.8e-41 173.7 118 78.0
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.5e-35 154.1 141 61.7
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.8e-33 147.1 191 47.6
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 9.5e-30 134.8 96 75.0
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.4e-25 120.9 69 91.3


User provided reference genes

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