Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 1.0e-92 343.6 194 100.0
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 6.1e-66 254.6 194 73.2
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 1.8e-65 253.1 188 78.2
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 2.3e-65 252.7 188 76.6
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.1e-62 243.8 189 77.2
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 7.7e-61 237.7 189 75.7
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 2.2e-60 236.1 183 77.0
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 6.5e-60 234.6 188 73.4
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 7.2e-59 231.1 202 69.3
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 9.4e-59 230.7 193 67.9
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 1.2e-58 230.3 192 72.4
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 3.6e-58 228.8 197 71.1
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 8.0e-58 227.6 193 71.0
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 4.0e-57 225.3 200 68.0
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 3.4e-56 222.2 190 71.1
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 4.4e-56 221.9 193 73.1
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 5.7e-56 221.5 191 70.7
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 1.3e-55 220.3 193 70.5
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.1e-54 217.2 193 69.9
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.8e-54 216.5 195 70.8
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 5.4e-54 214.9 193 68.9
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.0e-54 214.5 192 66.1
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.6e-53 213.4 192 69.8
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 2.0e-53 213.0 191 70.2
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 2.0e-53 213.0 195 68.7
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.7e-53 212.6 195 64.6
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.7e-53 211.1 192 65.6
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.0e-52 210.7 192 66.1
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 2.3e-52 209.5 202 66.3
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.0e-52 208.4 192 65.6
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 6.6e-52 208.0 198 67.2
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-51 207.2 192 64.6
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 3.3e-51 205.7 198 63.6
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.3e-51 205.7 195 66.2
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.3e-51 205.7 192 65.6
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 3.3e-51 205.7 199 66.8
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.3e-51 205.7 189 68.3
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 4.3e-51 205.3 189 67.2
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.6e-50 203.4 197 69.0
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.6e-50 203.4 186 68.3
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 2.8e-50 202.6 190 67.9
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 4.7e-50 201.8 191 66.0
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 6.1e-50 201.4 184 69.6
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 2.3e-49 199.5 188 68.1
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 3.0e-49 199.1 198 62.6
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 4.0e-49 198.7 192 67.2
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.2e-49 198.4 192 65.1
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 2.6e-48 196.1 197 63.5
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.6e-48 196.1 188 68.1
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 5.7e-48 194.9 188 67.0
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 5.7e-48 194.9 196 61.7
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 5.7e-48 194.9 196 61.7
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 5.7e-48 194.9 196 61.7
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 7.5e-48 194.5 201 64.2
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 2.2e-47 193.0 199 65.8
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 2.9e-47 192.6 194 63.9
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 3.7e-47 192.2 184 66.3
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 6.4e-47 191.4 183 66.7
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 8.3e-47 191.0 202 62.4
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 8.3e-47 191.0 197 65.5
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.1e-46 190.7 191 65.4
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.4e-46 190.3 197 62.4
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.8e-46 189.9 191 61.8
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.8e-46 189.9 191 61.8
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 4.1e-46 188.7 187 63.6
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 5.4e-46 188.3 195 61.0
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 5.4e-46 188.3 197 61.9
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.2e-45 187.2 201 65.2
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.6e-45 186.8 197 64.5
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.6e-45 186.8 187 62.6
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 1.6e-45 186.8 191 62.8
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 1.6e-45 186.8 198 63.6
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.7e-45 186.0 195 63.1
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.0e-44 184.1 197 64.0
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 2.3e-44 183.0 196 62.2
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 3.9e-44 182.2 193 63.7
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 3.9e-44 182.2 192 62.0
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 5.0e-44 181.8 187 63.6
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 5.0e-44 181.8 197 65.0
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 8.6e-44 181.0 197 64.0
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.5e-43 180.3 188 66.5
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 1.9e-43 179.9 200 58.0
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 3.3e-43 179.1 200 59.5
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 3.3e-43 179.1 194 58.8
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 5.6e-43 178.3 204 60.3
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.6e-42 176.8 194 58.8
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 2.8e-42 176.0 189 59.8
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.6e-42 175.6 193 61.7
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 1.0e-41 174.1 196 57.7
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.0e-41 174.1 193 61.7
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 1.4e-41 173.7 195 58.5
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.8e-41 173.3 188 59.6
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.8e-41 173.3 188 59.6
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 6.8e-41 171.4 193 60.6
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 6.8e-41 171.4 192 60.4
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 8.9e-41 171.0 196 55.6
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 1.5e-40 170.2 187 59.9
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 1.7e-39 166.8 164 59.8
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.9e-38 163.3 188 56.4
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.6e-37 160.2 141 71.6
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.0e-37 159.8 135 73.3
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.0e-37 159.8 193 58.5
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.7e-37 159.5 195 59.0
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 6.0e-37 158.3 164 56.7
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 3.0e-36 156.0 164 56.7
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 8.6e-36 154.5 190 50.5
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.1e-35 154.1 135 71.9
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 1.1e-35 154.1 195 54.9
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.5e-35 153.7 189 51.9
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 3.4e-32 142.5 184 51.6
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 4.4e-32 142.1 155 60.6
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 5.8e-32 141.7 155 62.6
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 7.5e-32 141.4 181 51.4
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 9.8e-32 141.0 195 52.3
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 2.9e-31 139.4 107 67.3
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 2.9e-31 139.4 189 54.5
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 8.3e-31 137.9 151 61.6
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-30 136.3 151 60.3
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-30 136.3 132 60.6
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 6.0e-29 131.7 136 57.4
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 8.6e-28 127.9 117 59.0
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 7.3e-27 124.8 119 58.8
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 1.6e-26 123.6 204 51.5
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 8.9e-25 117.9 107 63.6
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 2.7e-21 106.3 118 59.3
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 2.8e-18 96.3 105 67.6
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.4e-17 93.2 185 45.9
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 8.9e-17 91.3 85 56.5
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.4e-14 83.2 132 42.4
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 3.2e-14 82.8 119 44.5
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 5.1e-12 75.5 133 50.4
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.5e-11 73.9 66 60.6
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 2.8e-10 69.7 59 81.4
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 6.2e-10 68.6 116 44.8
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 9.0e-09 64.7 184 41.3
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 2.9e-07 59.7 56 64.3
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 2.9e-07 59.7 69 52.2


User provided reference genes

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