Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 2.7e-58 228.4 113 100.0
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 4.8e-47 191.0 114 81.6
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.8e-44 181.4 109 77.1
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 3.8e-44 181.4 107 79.4
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 3.2e-43 178.3 107 75.7
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 9.4e-43 176.8 107 75.7
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 1.6e-42 176.0 107 74.8
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 3.6e-42 174.9 108 75.9
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 4.7e-42 174.5 108 75.9
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.3e-41 172.2 107 75.7
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 3.0e-41 171.8 108 76.9
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 5.2e-41 171.0 107 74.8
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 5.2e-41 171.0 113 70.8
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 5.2e-41 171.0 108 75.0
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 1.5e-40 169.5 108 76.9
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 2.0e-40 169.1 107 72.0
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 2.6e-40 168.7 112 71.4
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 2.6e-40 168.7 107 74.8
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 7.5e-40 167.2 108 71.3
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.3e-39 166.4 108 76.9
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 2.8e-39 165.2 108 72.2
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.7e-39 164.9 107 73.8
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 3.7e-39 164.9 107 71.0
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 6.3e-39 164.1 107 72.9
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 8.3e-39 163.7 107 72.9
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.8e-38 162.5 108 73.1
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.8e-38 162.5 108 71.3
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 2.4e-38 162.2 108 71.3
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 2.4e-38 162.2 108 71.3
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 3.1e-38 161.8 107 68.2
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 9.1e-38 160.2 107 71.0
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 9.1e-38 160.2 107 71.0
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 9.1e-38 160.2 107 69.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.6e-37 159.5 107 70.1
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.6e-37 159.5 108 70.4
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.6e-37 159.5 107 68.2
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.6e-37 159.5 108 70.4
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 2.0e-37 159.1 108 68.5
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 2.0e-37 159.1 107 71.0
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.7e-37 158.7 107 69.2
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 3.5e-37 158.3 107 69.2
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 3.5e-37 158.3 107 69.2
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 3.5e-37 158.3 104 72.1
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 4.5e-37 157.9 108 69.4
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 5.9e-37 157.5 108 68.5
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 5.9e-37 157.5 109 68.8
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 7.7e-37 157.1 108 67.6
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 7.7e-37 157.1 108 67.6
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 7.7e-37 157.1 107 67.3
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.0e-36 156.8 107 69.2
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 1.0e-36 156.8 107 67.3
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 1.3e-36 156.4 109 66.1
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 2.2e-36 155.6 106 67.9
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 2.9e-36 155.2 108 68.5
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 2.9e-36 155.2 109 68.8
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 3.8e-36 154.8 107 67.3
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 6.5e-36 154.1 108 67.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 6.5e-36 154.1 107 66.4
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 6.5e-36 154.1 107 66.4
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 6.5e-36 154.1 107 66.4
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 8.5e-36 153.7 107 64.5
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 3.2e-35 151.8 110 65.5
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 3.2e-35 151.8 108 67.6
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 7.2e-35 150.6 110 67.3
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 7.2e-35 150.6 107 66.4
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 9.5e-35 150.2 108 65.7
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 64.8
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.6e-34 149.4 108 69.4
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.6e-34 149.4 107 65.4
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.1e-34 149.1 108 65.7
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 2.1e-34 149.1 108 65.7
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 2.8e-34 148.7 108 63.9
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 2.8e-34 148.7 108 65.7
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 3.6e-34 148.3 110 63.6
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.6e-34 148.3 108 64.8
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 4.7e-34 147.9 106 65.1
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 8.0e-34 147.1 107 65.4
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 8.0e-34 147.1 107 64.5
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.0e-33 146.7 107 64.5
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.4e-33 146.4 109 62.4
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 2.3e-33 145.6 107 62.6
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.0e-33 145.2 108 63.0
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.2e-32 143.3 108 66.7
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.5e-32 142.9 108 63.9
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 1.5e-32 142.9 108 62.0
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 2.0e-32 142.5 107 64.5
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 3.4e-32 141.7 107 63.6
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 3.4e-32 141.7 107 63.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 3.4e-32 141.7 98 68.4
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 7.5e-32 140.6 107 63.6
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 9.8e-32 140.2 107 60.7
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.3e-31 139.8 103 63.1
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.2e-31 139.0 107 61.7
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 3.7e-31 138.3 107 61.7
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 4.9e-31 137.9 107 63.6
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.9e-31 137.9 85 76.5
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 4.9e-31 137.9 112 60.7
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 8.3e-31 137.1 99 67.7
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 1.1e-30 136.7 95 67.4
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 1.4e-30 136.3 83 78.3
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.4e-30 136.3 85 75.3
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 2.4e-30 135.6 107 59.8
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 4.1e-30 134.8 86 73.3
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 5.4e-30 134.4 107 57.0
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 7.0e-30 134.0 107 57.9
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 7.0e-30 134.0 90 67.8
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 1.2e-29 133.3 107 54.2
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 2.7e-29 132.1 107 57.0
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.7e-29 132.1 109 55.0
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 3.5e-29 131.7 107 56.1
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 4.5e-29 131.3 84 73.8
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 5.9e-29 131.0 107 55.1
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.3e-28 129.8 107 57.0
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.7e-28 129.4 94 64.9
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 2.9e-28 128.6 89 68.5
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.8e-28 128.3 108 58.3
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 3.8e-28 128.3 91 68.1
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 3.8e-28 128.3 107 61.7
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.1e-27 126.7 108 57.4
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.5e-27 125.6 110 56.4
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 4.3e-27 124.8 108 53.7
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 4.3e-27 124.8 108 57.4
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.6e-27 124.4 87 70.1
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 1.2e-26 123.2 83 71.1
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.2e-26 123.2 83 71.1
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 2.8e-26 122.1 108 55.6
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 3.6e-26 121.7 107 54.2
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 8.0e-26 120.6 88 65.9
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.4e-25 119.8 86 65.1
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.8e-25 119.4 108 55.6
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 5.2e-25 117.9 84 65.5
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 5.2e-25 117.9 107 50.5
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 2.2e-23 112.5 87 59.8
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 2.9e-23 112.1 107 48.6
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 6.4e-23 110.9 86 60.5
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 1.8e-22 109.4 72 63.9
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 2.4e-22 109.0 65 81.5
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 3.2e-22 108.6 84 63.1
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.1e-22 108.2 86 59.3
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.6e-21 106.3 107 43.9
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 2.7e-21 105.5 84 64.3
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.7e-20 102.8 82 61.0
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 1.7e-20 102.8 87 54.0
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 5.6e-19 97.8 108 45.4
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 7.3e-19 97.4 87 56.3
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 1.6e-18 96.3 109 43.1
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 8.0e-18 94.0 109 43.1
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.4e-17 93.2 87 56.3
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.8e-17 92.8 85 54.1
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 6.8e-17 90.9 109 42.2
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 1.2e-16 90.1 65 70.8
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 7.5e-16 87.4 60 70.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 9.8e-16 87.0 82 50.0
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.7e-15 86.3 80 50.0
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 4.9e-15 84.7 110 43.6
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 8.1e-10 67.4 109 37.6
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 1.7e-07 59.7 109 31.2


User provided reference genes

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