Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 3.5e-95 351.7 186 100.0
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.7e-36 156.8 191 53.9
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 8.3e-36 154.5 188 53.2
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 7.0e-35 151.4 179 53.6
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 9.1e-35 151.0 181 54.1
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.5e-34 149.1 178 52.2
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.7e-33 146.7 182 51.6
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 1.1e-32 144.1 182 50.5
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 3.2e-32 142.5 181 53.0
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 4.2e-32 142.1 181 54.1
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.6e-31 140.2 178 50.6
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 3.6e-31 139.0 182 52.2
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 3.6e-31 139.0 181 52.5
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 6.1e-31 138.3 173 50.3
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 8.0e-31 137.9 171 51.5
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 4.0e-30 135.6 180 51.7
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.5e-29 133.7 168 48.8
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 9.8e-29 131.0 181 50.8
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 9.8e-29 131.0 178 50.0
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 1.3e-28 130.6 179 49.7
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 2.2e-28 129.8 193 48.7
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 2.2e-28 129.8 194 48.5
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 2.2e-28 129.8 172 50.0
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.7e-28 129.0 173 48.6
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 6.3e-28 128.3 180 51.7
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 8.3e-28 127.9 181 48.6
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 2.4e-27 126.3 179 46.4
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 7.0e-27 124.8 146 51.4
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 9.1e-27 124.4 182 50.5
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 1.6e-26 123.6 177 49.2
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 2.0e-26 123.2 175 48.0
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 2.0e-26 123.2 175 50.9
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.5e-26 122.1 146 50.7
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.7e-25 120.2 167 46.7
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 2.3e-25 119.8 146 50.7
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 3.8e-25 119.0 176 47.7
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 5.0e-25 118.6 176 47.2
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 6.6e-25 118.2 183 45.4
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 6.6e-25 118.2 170 48.8
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 1.1e-24 117.5 178 46.1
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 1.1e-24 117.5 163 50.3
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 1.6e-23 113.6 158 53.2
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.6e-23 113.6 183 48.1
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.8e-23 112.8 149 48.3
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 4.7e-23 112.1 175 46.9
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.4e-22 110.5 182 45.1
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 2.3e-22 109.8 145 50.3
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 3.0e-22 109.4 177 45.8
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 3.0e-22 109.4 98 59.2
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 4.0e-22 109.0 182 45.1
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 4.0e-22 109.0 182 45.6
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 2.0e-21 106.7 190 46.3
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 4.1e-19 99.0 177 42.9
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 4.1e-19 99.0 200 42.5
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 9.2e-19 97.8 156 46.8
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.2e-18 97.4 177 43.5
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 2.0e-18 96.7 142 46.5
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 6.6e-17 91.7 142 45.1
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 1.1e-16 90.9 147 43.5
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 2.5e-16 89.7 138 48.6
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 4.3e-16 89.0 170 44.1
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 7.3e-16 88.2 140 47.9
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 9.5e-16 87.8 165 45.5
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.1e-15 86.7 91 57.1
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 3.6e-15 85.9 138 49.3
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 4.7e-15 85.5 170 42.9
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 4.7e-15 85.5 162 41.4
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 6.1e-15 85.1 182 41.8
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 8.0e-15 84.7 155 43.9
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 8.0e-15 84.7 108 43.5
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 1.4e-14 84.0 88 55.7
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 1.4e-14 84.0 110 48.2
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 1.8e-14 83.6 133 48.1
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 1.8e-14 83.6 156 41.7
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 2.3e-14 83.2 147 46.9
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 2.3e-14 83.2 163 45.4
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 4.0e-14 82.4 91 51.6
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 5.2e-14 82.0 177 41.8
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 5.2e-14 82.0 155 41.9
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 6.8e-14 81.6 94 51.1
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 8.9e-14 81.3 185 35.7
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 8.9e-14 81.3 88 54.5
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 2.0e-13 80.1 157 40.8
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 2.0e-13 80.1 95 53.7
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 2.0e-13 80.1 142 40.1
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 5.8e-13 78.6 178 38.2
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 2.2e-12 76.6 205 35.1
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 2.2e-12 76.6 136 45.6
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 2.9e-12 76.3 153 38.6
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 3.7e-12 75.9 185 37.3
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 1.1e-11 74.3 155 41.3
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 1.1e-11 74.3 85 50.6
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 2.4e-11 73.2 155 41.3
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 3.2e-11 72.8 185 35.7
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 3.2e-11 72.8 119 44.5
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 4.1e-11 72.4 149 40.3
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 4.1e-11 72.4 149 39.6
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 4.1e-11 72.4 96 47.9
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 5.4e-11 72.0 93 51.6
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 7.0e-11 71.6 119 48.7
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.2e-10 70.9 116 39.7
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 1.6e-10 70.5 88 53.4
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 1.6e-10 70.5 87 52.9
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 2.0e-10 70.1 149 38.9
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 2.0e-10 70.1 65 56.9
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.0e-10 70.1 89 47.2
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 2.7e-10 69.7 155 42.6
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 2.7e-10 69.7 153 41.2
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 3.5e-10 69.3 170 36.5
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 6.0e-10 68.6 130 42.3
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 6.0e-10 68.6 91 47.3
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 6.0e-10 68.6 101 47.5
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 1.0e-09 67.8 91 49.5
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 1.0e-09 67.8 91 49.5
THA.LOC104799749 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 1.0e-09 67.8 98 50.0
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.3e-09 67.4 150 38.7
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 2.3e-09 66.6 101 48.5
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 2.3e-09 66.6 140 38.6
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 3.0e-09 66.2 80 52.5
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 3.0e-09 66.2 123 39.0
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 8.6e-09 64.7 91 47.3
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 8.6e-09 64.7 91 47.3
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 8.6e-09 64.7 65 53.8
Migut.J00684 Erythranthe guttata HOM05D006872 ORTHO05D006261 8.6e-09 64.7 105 43.8
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 1.1e-08 64.3 91 47.3
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 1.1e-08 64.3 77 46.8
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 1.1e-08 64.3 96 50.0
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 1.5e-08 63.9 99 50.5
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 1.5e-08 63.9 114 40.4
BcaC06g32361 Brassica carinata HOM05D010494 ORTHO05D006261 3.3e-08 62.8 156 37.2
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 3.3e-08 62.8 156 37.2
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 3.3e-08 62.8 114 40.4
BcaC06g32348 Brassica carinata HOM05D010494 ORTHO05D006261 4.3e-08 62.4 104 41.3
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 4.3e-08 62.4 51 70.6
Haze_23331 Corylus avellana HOM05D021165 ORTHO05D006261 4.3e-08 62.4 114 36.0
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.3e-08 62.4 115 39.1
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 5.6e-08 62.0 89 47.2
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 7.3e-08 61.6 93 44.1
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 7.3e-08 61.6 93 44.1
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 7.3e-08 61.6 62 51.6
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 9.5e-08 61.2 57 66.7
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 9.5e-08 61.2 115 38.3
Aa31LG10G7560 Aethionema arabicum HOM05D006872 ORTHO05D006261 1.2e-07 60.8 99 46.5
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 1.6e-07 60.5 97 49.5
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 2.1e-07 60.1 90 40.0
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.1e-07 60.1 62 51.6
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 2.8e-07 59.7 91 36.3
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 2.8e-07 59.7 128 40.6
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 3.6e-07 59.3 133 39.1
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 3.6e-07 59.3 158 33.5
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 4.7e-07 58.9 51 66.7
Aqoxy1G01677 Aquilegia oxysepala HOM05D008821 ORTHO05D010464 6.2e-07 58.5 102 41.2
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 6.2e-07 58.5 115 38.3
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 8.0e-07 58.2 101 42.6
MELO3C007119.2 Cucumis melo HOM05D008821 ORTHO05D010464 1.1e-06 57.8 108 43.5
CsaV3_6G051900 Cucumis sativus L. HOM05D000116 ORTHO05D010464 1.1e-06 57.8 106 40.6
Medtr2g102560 Medicago truncatula HOM05D006872 ORTHO05D006261 1.8e-06 57.0 65 50.8
QL01p011630 Quercus lobata HOM05D021165 ORTHO05D006261 2.3e-06 56.6 150 34.7
ClCG01G024780 Citrullus lanatus HOM05D008821 ORTHO05D010464 3.1e-06 56.2 101 43.6
QL01p011372 Quercus lobata HOM05D021165 ORTHO05D006261 3.1e-06 56.2 147 34.7
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 4.0e-06 55.8 118 40.7
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 4.0e-06 55.8 59 55.9
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 4.0e-06 55.8 131 35.9
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 6.8e-06 55.1 137 32.8
RcHm_v2.0_Chr3g0488241 Rosa chinensis HOM05D006872 ORTHO05D006261 6.8e-06 55.1 56 48.2
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 8.9e-06 54.7 115 35.7


User provided reference genes

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