Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1967 Cannabis sativa HOM05D063274 ORTHO05D001345 4.1e-86 322.4 336 100.0
CANSAT64G2740 Cannabis sativa HOM05D063274 ORTHO05D001345 6.9e-25 119.0 227 98.2
Ciclev10017970m.g Citrus clementina HOM05D007981 ORTHO05D001345 1.0e-12 78.6 124 44.4
Atru.chr10.126 Acer truncatum HOM05D007981 ORTHO05D001345 5.7e-11 72.8 97 48.5
Oeu022685.1 Olea europaea HOM05D007981 ORTHO05D001345 3.7e-10 70.1 88 45.5
arahy.Tifrunner.gnm1.ann1.26SKGH Arachis hypogaea HOM05D007981 ORTHO05D001345 8.2e-10 68.9 87 47.1
arahy.Tifrunner.gnm1.ann1.8NJ4D9 Arachis hypogaea HOM05D007981 ORTHO05D001345 8.2e-10 68.9 87 47.1
CSS0007963 Camellia sinensis var. sinensis HOM05D007981 ORTHO05D001345 1.4e-09 68.2 87 49.4
GSVIVG01031362001 Vitis vinifera HOM05D007981 ORTHO05D001345 3.1e-09 67.0 125 41.6
TAR633G1356 Trochodendron aralioides HOM05D007981 ORTHO05D001345 5.3e-09 66.2 103 44.7
Phvul.011G197200 Phaseolus vulgaris HOM05D007981 ORTHO05D001345 7.0e-09 65.9 89 46.1
TWI36G0229 Tripterygium wilfordii HOM05D007981 ORTHO05D001345 7.0e-09 65.9 99 44.4
Hma1.2p1_0662F.1_g198260 Hydrangea macrophylla HOM05D007981 ORTHO05D001345 9.1e-09 65.5 84 46.4
Actinidia19656 Actinidia chinensis HOM05D007981 ORTHO05D001345 1.6e-08 64.7 87 44.8
Thecc.09G196000 Theobroma cacao HOM05D007981 ORTHO05D001345 1.6e-08 64.7 90 47.8
SGA_v2.0_scaffold60G20991 Striga asiatica HOM05D001930 ORTHO05D001345 2.6e-08 63.9 94 42.6
Lsat_1_v5_gn_3_25100 Lactuca sativa HOM05D007981 ORTHO05D001345 3.5e-08 63.5 87 47.1
ECA246G2938 Erigeron canadensis HOM05D007981 ORTHO05D001345 4.5e-08 63.2 87 44.8
ClCG01G001160 Citrullus lanatus HOM05D007981 ORTHO05D001345 7.7e-08 62.4 108 39.8
FvH4_6g00040 Fragaria vesca HOM05D007981 ORTHO05D001345 7.7e-08 62.4 90 46.7
PSO801G0843 Papaver somniferum HOM05D001930 ORTHO05D001345 7.7e-08 62.4 86 40.7
Rhsim05G0162500 Rhododendron simsii HOM05D007981 ORTHO05D001345 7.7e-08 62.4 87 47.1
Migut.F00675 Erythranthe guttata HOM05D001930 ORTHO05D001345 1.0e-07 62.0 118 37.3
Os08g0543000 Oryza sativa ssp. japonica HOM05D007981 ORTHO05D001345 1.0e-07 62.0 85 47.1
Prupe.6G365700 Prunus persica HOM05D007981 ORTHO05D001345 1.0e-07 62.0 110 40.9
MELO3C005819.2 Cucumis melo HOM05D007981 ORTHO05D001345 1.7e-07 61.2 104 44.2
FAN09G0734 Fragaria x ananassa HOM05D007981 ORTHO05D001345 1.7e-07 61.2 90 46.7
Manes.12G000800 Manihot esculenta HOM05D007981 ORTHO05D001345 1.7e-07 61.2 84 47.6
MBI07_g42070_MAGBIO Magnolia biondii HOM05D007981 ORTHO05D001345 2.9e-07 60.5 92 44.6
TAR636G1519 Trochodendron aralioides HOM05D007981 ORTHO05D001345 2.9e-07 60.5 89 44.9
Aqoxy2G00919 Aquilegia oxysepala HOM05D001930 ORTHO05D001345 3.8e-07 60.1 115 33.9
Gohir.A05G001200 Gossypium hirsutum HOM05D007981 ORTHO05D001345 3.8e-07 60.1 112 41.1
Gorai.009G001400 Gossypium raimondii HOM05D007981 ORTHO05D001345 3.8e-07 60.1 112 41.1
Cc09_g04330 Coffea canephora HOM05D007981 ORTHO05D001345 5.0e-07 59.7 83 44.6
PSO339G3119 Papaver somniferum HOM05D001930 ORTHO05D001345 5.0e-07 59.7 86 40.7
PGR031G0831 Punica granatum HOM05D007981 ORTHO05D001345 5.0e-07 59.7 85 45.9
Glyma.15G228000 Glycine max HOM05D007981 ORTHO05D001345 6.5e-07 59.3 129 37.2
Gohir.D05G001500 Gossypium hirsutum HOM05D007981 ORTHO05D001345 6.5e-07 59.3 114 40.4
Glyma.11G228400 Glycine max HOM05D001930 ORTHO05D001345 1.1e-06 58.5 107 33.6
Lj3g0009424 Lotus japonicus HOM05D007981 ORTHO05D001345 1.1e-06 58.5 89 42.7
Oeu025644.2 Olea europaea HOM05D001930 ORTHO05D001345 1.1e-06 58.5 94 37.2
PSO339G2624 Papaver somniferum HOM05D001930 ORTHO05D001345 1.1e-06 58.5 102 36.3
CSS0031125 Camellia sinensis var. sinensis HOM05D001930 ORTHO05D001345 1.5e-06 58.2 93 37.6
Ca_05952_v3 Cicer arietinum L. HOM05D001930 ORTHO05D001345 1.5e-06 58.2 108 35.2
Ciclev10030993m.g Citrus clementina HOM05D001930 ORTHO05D001345 1.5e-06 58.2 122 35.2
PSO384G0402 Papaver somniferum HOM05D001930 ORTHO05D001345 1.5e-06 58.2 99 40.4
SalBow2G2157 Salvia bowleyana HOM05D007981 ORTHO05D001345 1.5e-06 58.2 83 44.6
Psat4g190600 Pisum sativum HOM05D007981 ORTHO05D001345 1.9e-06 57.8 89 40.4
SalBow6G0604 Salvia bowleyana HOM05D001930 ORTHO05D001345 1.9e-06 57.8 117 35.0
Solyc05g052715.1 Solanum lycopersicum HOM05D001930 ORTHO05D001345 1.9e-06 57.8 89 37.1
MSTRG.8950 Avicennia marina HOM05D001930 ORTHO05D001345 2.5e-06 57.4 121 33.1
CDE07G0205 Ceratophyllum demersum HOM05D001930 ORTHO05D001345 2.5e-06 57.4 96 39.6
AUR62012234 Chenopodium quinoa HOM05D001930 ORTHO05D001345 2.5e-06 57.4 86 39.5
SGA_v2.0_scaffold44G16687 Striga asiatica HOM05D001930 ORTHO05D001345 2.5e-06 57.4 84 39.3
SalBow1G1067 Salvia bowleyana HOM05D007981 ORTHO05D001345 3.2e-06 57.0 111 39.6
Actinidia13930 Actinidia chinensis HOM05D001930 ORTHO05D001345 4.2e-06 56.6 132 33.3
EL10Ac2g04813 Beta vulgaris HOM05D001930 ORTHO05D001345 4.2e-06 56.6 116 37.9
Cpa.g.sc19.190 Carica papaya HOM05D001930 ORTHO05D001345 4.2e-06 56.6 85 38.8
AUR62022866 Chenopodium quinoa HOM05D001930 ORTHO05D001345 4.2e-06 56.6 86 39.5
ECA233G1150 Erigeron canadensis HOM05D001930 ORTHO05D001345 4.2e-06 56.6 92 40.2
Hma1.2p1_0281F.1_g113000 Hydrangea macrophylla HOM05D001930 ORTHO05D001345 4.2e-06 56.6 123 37.4
Sed0005322 Sechium edule HOM05D007981 ORTHO05D001345 4.2e-06 56.6 106 36.8
PGSC0003DMG401011931 Solanum tuberosum HOM05D001930 ORTHO05D001345 4.2e-06 56.6 114 36.0
PGSC0003DMG402011931 Solanum tuberosum HOM05D001930 ORTHO05D001345 4.2e-06 56.6 114 36.0
Zm00001eb037390 Zea mays HOM05D007981 ORTHO05D001345 4.2e-06 56.6 85 44.7
Lj6g0015169 Lotus japonicus HOM05D001930 ORTHO05D001345 5.5e-06 56.2 87 41.4
LjContig00142g0017848 Lotus japonicus HOM05D001930 ORTHO05D001345 5.5e-06 56.2 87 41.4
FvH4_7g24320 Fragaria vesca HOM05D001930 ORTHO05D001345 7.2e-06 55.8 95 36.8
FAN01G1543 Fragaria x ananassa HOM05D001930 ORTHO05D001345 7.2e-06 55.8 95 36.8
FAN03G2510 Fragaria x ananassa HOM05D001930 ORTHO05D001345 7.2e-06 55.8 95 36.8
FAN10G2989 Fragaria x ananassa HOM05D001930 ORTHO05D001345 7.2e-06 55.8 95 36.8
HanXRQChr08g0222141 Helianthus annuus HOM05D001930 ORTHO05D001345 7.2e-06 55.8 85 41.2
Nn2g11456 Nelumbo nucifera HOM05D001930 ORTHO05D001345 7.2e-06 55.8 86 37.2
Nn2g13688 Nelumbo nucifera HOM05D001930 ORTHO05D001345 7.2e-06 55.8 86 36.0
Peaxi162Scf00344g00031 Petunia axillaris HOM05D007981 ORTHO05D001345 7.2e-06 55.8 112 37.5
Phvul.001G241800 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 7.2e-06 55.8 100 36.0
Actinidia00941 Actinidia chinensis HOM05D001930 ORTHO05D001345 9.4e-06 55.5 112 35.7
Dinv03280 Davidia involucrata HOM05D007981 ORTHO05D001345 9.4e-06 55.5 31 80.6
Dinv23092 Davidia involucrata HOM05D001930 ORTHO05D001345 9.4e-06 55.5 108 38.0
Medtr5g082480 Medicago truncatula HOM05D001930 ORTHO05D001345 9.4e-06 55.5 112 33.9
Os09g0518600 Oryza sativa ssp. japonica HOM05D007981 ORTHO05D001345 9.4e-06 55.5 106 39.6
Sopen03g026190 Solanum pennellii HOM05D001930 ORTHO05D001345 9.4e-06 55.5 114 35.1
VMungo1127G1819 Vigna mungo HOM05D007981 ORTHO05D001345 9.4e-06 55.5 111 41.4


User provided reference genes

Program Settings